Biology Reference
In-Depth Information
2. Barrett T, Suzek TO, Troup DB
et al
. (2005) NCBI GEO: mining millions of
expression profiles — database and tools.
Nucleic Acids Res
33
: D562-6.
3. Parkinson H, Sarkans U, Shojatalab M
et al
. (2005) ArrayExpress — a public
repository for microarray gene expression data at the EBI.
Nucleic Acids Res
33
:
D553-5.
4. Sutton AJ, Abrams KR, Jones DR
et al
. (2000)
Methods for Meta-analysis in
Medical Research
. New York, NY: John Wiley & Sons.
5. Chalmers I. (1993) The Cochrane Collaboration: preparing, maintaining, and
disseminating systematic reviews of the effects of health care.
Ann NY Acad Sci
703
: 156-65.
6. Punt CJA, Buyse M, Köhne CH
et al
. (2007) Endpoints in adjuvant treatment
trials: a systematic review of the literature in colon cancer and proposed defini-
tions for future trials.
J Natl Cancer Inst
99
: 998-1003.
7. Hedges LV, Olkin I. (1985)
Statistical Methods for Meta-analysis
. New York,
NY: Academic Press.
8. Altman DG, Deeks JJ. (2002) Meta-analysis, Simpson's paradox and the num-
ber needed to treat.
BMC Med Res Methodol
2
: 3.
9. Benito M, Parker J, Du Q
et al
. (2004) Adjustment of systematic microarray
data biases.
Bioinformatics
20
: 105-14.
10. Goldstein DR, Delorenzi M, Luthi-Carter R, Sengstag T. (2009) Meta-analysis
of microarray studies. In: Guerra R, Goldstein DR (eds.).
Meta-analysis and
Combining Information in Genetics
. Boca Raton, FL: Chapman-Hall/CRC Press.
11. Choi JK, Yu U, Kim S, Yoo OJ. (2003) Combining multiple microarray studies
and modeling interstudy variation.
Bioinformatics
19
(Suppl 1): i84-90.
12. Cooper HM, Hedges LV. (1994)
The Handbook of Research Synthesis
. New York,
NY: Russell Sage Foundation.
13. Stevens JR, Doerge RW. (2005) Combining Affymetrix microarray results.
BMC
Bioinformatics
6
: 57.
14. Grützmann R, Boriss H, Ammerpohl O
et al
. (2005) Meta-analysis of microarray
data on pancreatic cancer defines a set of commonly dysregulated genes.
Oncogene
24
: 5079-88.
15. Ghosh D, Barette TR, Rhodes D, Chinnaiyan AM. (2003) Statistical issues and
methods for meta-analysis of microarray data: a case study in prostate cancer.
Funct Integr Genomics
3
: 180-8.
16. Kulinskaya E, Morgenthaler S, Staudte RG. (2008)
A Guide to Calibrating and
Combining Statistical Evidence
. New York, NY: Wiley-Interscience.
17. Westfall PH, Young SS. (1993)
Resampling-based Multiple Testing: Examples
and Methods for p-Value Adjustment
. New York, NY: Wiley.
18. Yekutieli D, Benjamini Y. (1999) Resampling-based false discovery rate control-
ling multiple test procedures for correlated test statistics.
J Stat Plan Inference
82
: 171-96.
