Biology Reference
In-Depth Information
Table 1.
Publicly available breast cancer survival datasets.
Dataset
No. of
No. of
symbol
arrays
Institution
References
Platform
Data source
GeneIDs
NKI
337
Nederlands Kanker Instituut
30,31
Agilent
author website
13120
EMC
286
Erasmus Medical Center
32
Affy U133A
GEO:GSE2034
11837
UPP
249
Karolinksa Institute (Uppsala)
33,34
Affy U133A,B
GEO:GSE4922
15684
STOCK
159
Karolinska Institute (Stockholm)
34,35
Affy U133A,B
GEO:GSE1456
15684
DUKE
171
Duke University
36,37
Affy U95Av2
author website
8149
UCSF
161
+
8
UC San Francisco
38
cDNA
author website
6178
UNC
143
+
10
University of Carolina
39
Agilent HuA1
author website
13784
NCH
135
Nottingham City Hospital
40
Agilent HuA1
AE:E-UCON-1
13784
STNO
115
+
7
Stanford
+
Norwegian
41,42
cDNA
author website
5614
Radium Hosp.
JRH1
99
John Radcliffe Hospital
43
cDNA
journal website
4112
JRH2
61
John Radcliffe Hospital
44
Affy U133A
GEO:GSE2990
11837
MGH
60
Massachusetts General Hospital
45
Agilent
GEO:GSE1379
11421
Total
2530
=
2505 carcinomas
No. of the union of all GeneIDs:
17198
+
25 nonmalignant breast tissues
No. of GeneIDs common to
genomic platforms:
1963
Abbreviations: No., number; GEO:, Gene Expression Omnibus accession; AE:, ArrayExpress accession; Affy, Affymetrix.
