Biology Reference
In-Depth Information
48. Mewes HW, Amid C, Arnold R
et al
. (2004) MIPS: analysis and annotation of
proteins from whole genomes.
Nucleic Acids Res
32
Database issue: D41-4.
49. Huh WK, Falvo JV, Gerke LC
et al
. (2003) Global analysis of protein localiza-
tion in budding yeast.
Nature
425
: 686-91.
50. Tirosh I, Barkai N. (2005) Computational verification of protein-protein inter-
actions by orthologous co-expression.
BMC Bioinformatics
6
: 40.
51. Segal E, Wang H, Koller D. (2003) Discovering molecular pathways from pro-
tein interaction and gene expression data.
Bioinformatics
19
(Suppl 1): i264-71.
52. Farkas I, Jeong H, Vicsek T
et al
. (2003) The topology of the transcription reg-
ulatory network in the yeast,
Saccharomyces cerevisiae
.
Phys A: Stat Mech Appl
318
: 601-12.
53. Ihmels J, Bergmann S, Berman J, Barkai N. (2005) Comparative gene expres-
sion analysis by differential clustering approach: application to the
Candida
albicans
transcription program.
PLoS Genet
1
: e39.
54. Selmecki A, Bergmann S, Berman J. (2005) Comparative genome hybridization
reveals widespread aneuploidy in
Candida albicans
laboratory strains.
Mol
Microbiol
55
: 1553-65.
55. Ohno S, Wolf U, Atkin NB. (1968) Evolution from fish to mammals by gene
duplication.
Hereditas
59
: 169-87.
56. Kutalik Z, Beckmann J, Bergmann S. (2008) A modular approach for integrative
analysis of large-scale gene-expression and drug-response data.
Nat Biotechnol
26
(5): 531-9.
57. Staunton JE, Slonim DK, Coller HA
et al
. (2001) Chemosensitivity prediction
by transcriptional profiling.
Proc Natl Acad Sci USA
98
: 10787-92.
58. Ross DT, Scherf U, Eisen MB
et al
. (2000) Systematic variation in gene expres-
sion patterns in human cancer cell lines.
Nat Genet
24
: 227-35.
59. Butte AJ, Tamayo P, Slonim D
et al
. (2000) Discovering functional relationships
between RNA expression and chemotherapeutic susceptibility using relevance
networks.
Proc Natl Acad Sci USA
97
: 12182-6.
60. Scherf U, Ross DT, Waltham M
et al
. (2000) A gene expression database for the
molecular pharmacology of cancer.
Nat Genet
24
: 236-44.
61. Shi LM, Fan Y, Lee JK
et al
. (2000) Mining and visualizing large anticancer drug
discovery databases.
J Chem Inf Comput Sci
40
: 367-79.
62. Wheeler DL, Church DM, Federhen S
et al
. (2005) Database resources of the
National Center for Biotechnology Information.
Nucleic Acids Res
33
: D39-45.
63. Bairoch A, Apweiler R, Wu CH
et al
. (2005) The Universal Protein Resource
(UniProt).
Nucleic Acids Res
33
: D154-9.
64. Robinson MD, Grigull J, Mohammad N, Hughes TR. (2002) FunSpec: a web-
based cluster interpreter for yeast.
BMC Bioinformatics
3
: 35.
65. Doniger SW, Salomonis N, Dahlquist KD
et al
. (2003) MAPPFinder: using
Gene Ontology and GenMAPP to create a global gene-expression profile from
microarray data.
Genome Biol
4
: R7.