Information Technology Reference
In-Depth Information
[59]
Harrison A, Pearl F, Mott R, Thornton J, Orengo C. Quantifying the similarities within fold space. J
Mol Biol 2002;323 (5):909-26.
[60]
Carugo O, Pomgor S. Protein fold similarity estimated by a probabilistic approach based on Calpha-
Calpha distance comparison. J. Mol. Biol. 2002;315 (4):887-98.
[61]
Rogen P, Fain B. Automatic classification of protein structure by using Gauss integrals. Proc Natl
Acad Sci U S A 2003;100 (1):119-24.
[62]
Rogen P, Bohr H. A new family of global protein shape descriptors. Mathematical Biosciences
2003;182 (2):167-81.
[63]
Wolf YI, Rogozin IB, Grishin NV, Koonin EV. Genome trees and the tree of life. Trends Genet
2002;18 (9):472-9.
[64]
Mirkin BG, Fenner TI, Galperin MY, Koonin EV. Algorithms for computing parsimonious
evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of
horizontal gene transfer in the evolution of prokaryotes. BMC Evol Biol 2003;3 (1):2.
[65]
Hegyi H, Lin J, Greenbaum D, Gerstein M. Structural genomics analysis: characteristics of atypical,
common, and horizontally transferred folds. Proteins 2002;47 (2):126-41.
[66]
Gerstein M, Hegyi H. Comparing genomes in terms of protein structure: surveys of a finite parts list.
FEMS Microbiol Rev 1998;22 (4):277-304.
[67]
Jeong H, Tombor B, Albert R, Oltvai ZN, Barabasi AL. The large-scale organization of metabolic
networks. Nature 2000;407 (6804):651-4.
[68]
Jeong H, Mason SP, Barabasi AL, Oltvai ZN. Lethality and centrality in protein networks. Nature
2001;411 (6833):41-2.
[69]
Overbeek R, Larsen N, Pusch GD, D'Souza M, Selkov E, Jr., Kyrpides N, Fonstein M, Maltsev N,
Selkov E. WIT: integrated system for high-throughput genome sequence analysis and metabolic
reconstruction. Nucleic Acids Res 2000;28 (1):123-5.
[70]
Podani J, Oltvai ZN, Jeong H, Tombor B, Barabasi AL, Szathmary E. Comparable system-level
organization of Archaea and Eukaryotes. Nat Genet 2001;29 (1):54-6.
[71]
Tekaia F, Lazcano A, Dujon B. The genomic tree as revealed from whole proteome comparisons.
Genome Res 1999;9 (6):550-7.
[72]
Snel B, Bork P, Huynen MA. Genome phylogeny based on gene content. Nat Genet 1999;21
(1):108-10.
[73]
Korbel JO, Snel B, Huynen MA, Bork P. SHOT: a web server for the construction of genome
phylogenies. Trends Genet 2002;18 (3):158-62.
[74]
Snel B, Lehmann G, Bork P, Huynen MA. STRING: a web-server to retrieve and display the
repeatedly occurring neighbourhood of a gene. Nucleic Acids Res 2000;28 (18):3442-4.
[75]
Huynen MA, Snel B. Gene and context: integrative approaches to genome analysis. Adv Protein
Chem 2000;54:345-79.
[76]
Huynen M, Snel B, Lathe W, Bork P. Exploitation of gene context. Curr Opin Struct Biol 2000;10
(3):366-70.
[77]
Lathe WC, 3rd, Snel B, Bork P. Gene context conservation of a higher order than operons. Trends
Biochem Sci 2000;25 (10):474-9.
[78]
Rogozin IB, Makarova KS, Murvai J, Czabarka E, Wolf YI, Tatusov RL, Szekely LA, Koonin EV.
Connected gene neighborhoods in prokaryotic genomes. Nucleic Acids Res 2002;30 (10):2212-23.
[79]
Kanehisa M. Post-genome informatics. Oxford New York: Oxford University Press, 2000.
[80]
Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000;28
(1):27-30.
[81]
Oltvai ZN, Barabasi AL. Systems biology. Life's complexity pyramid. Science 2002;298 (5594):763-
4.
[82]
Bollobás B. Random Graphs. Cambridge: Cambridge University Press, 2001.
[83]
Dorogovtsev SN, Mendes JFF. Evolution of Networks. Oxford: Oxford University Press, 2003.
[84]
Barabasi AL, Albert R. Emergence of scaling in random networks. Science 1999;286 (5439):509-12.
[85]
Goh KI, Oh E, Jeong H, Kahng B, Kim D. Classification of scale-free networks. Proc Natl Acad Sci
U S A 2002;99 (20):12583-8.
[86]
Yook SH, Jeong H, Barabasi AL. Modeling the Internet's large-scale topology. Proc Natl Acad Sci U
S A 2002;99 (21):13382-6.
[87]
Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs: simple building
blocks of complex networks. Science 2002;298 (5594):824-7.
[88]
Shen-Orr SS, Milo R, Mangan S, Alon U. Network motifs in the transcriptional regulation network
of Escherichia coli. Nat Genet 2002;31 (1):64-8.
Search WWH ::




Custom Search