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In-Depth Information
Ta b l e 2 . 1 4
Indexes related to
D
6
dictionaries
Genomic sequences
|
D
6
|
L
6
|
H
6
| |
R
6
|
HR
6
10
−
3
Nanoarchaeum equitans
4,094
0.008
6
4,086
1.468
×
8.65
×
10
−
3
Mycoplasma genitalium
4,082
0.007
35
4,047
9.661
×
10
−
3
Mycoplasma mycoides
4,076
0.003
39
4,037
Haemophilus influenzae
4,096
0.002
0
4,096
0
Escherichia coli
0
0.0009
0
4,096
0
Ta b l e 2 . 1 5
Genomic forbidden lengths and words
Genomic sequences
MF
|
F
6
||
F
7
| |
F
8
|
|
F
9
|
|
F
10
|
|
F
11
|
|
F
12
|
Nanoarchaeum equitans
6
2
552
13,294
130,705 802,658 3,837,340 16,346,170
Mycoplasma genitalium
6
14
851
14,196
126,707 779,814 3,789,892 16,281,022
Mycoplasma mycoides
6
20
1,269
18,498
141,646 791,717 3,747,529 16,130,251
Haemophilus influenzae
7
0
12
1,077
33,891
442,572 3,083,682 15,281,515
Escherichia coli
7
0
1
176
5,617
150,468 1,997,469 13,298,293
Pseudomonas aeruginosa
8
0
0
276
21,387
326,432 2,536,746 13,827,364
Saccharomyces cerevisiae
9
0
0
0
99
31,619
1,007,904 10,179,957
Sorangium cellulosum
7
0
1
683
23,327
299,079 2,296,098 12,913,817
Homo sapiens chr. 19
9
0
0
0
53
12,763
469,379
6,041,533
C. elegans
10
0
0
0
0
38
54,011
2,847,301
D. melanogaster
11
0
0
0
0
0
3214
886,004
Homo sapiens chr. 1
9
0
0
0
1
2,698
149,365
2,830,885
Ta b l e 2 . 1 6
Indexes related to
D
12
dictionaries
Genomic sequences
|
D
12
|
L
12
|
H
12
|
|
R
12
|
RD
12
HR
12
AR
12
Nanoarchaeum equitans
431,046
0.87
385,146
45,900
0.11
8.39
2.30
Mycoplasma genitalium
496,194
0.85
435,502
60,692
0.13
7.175
2.38
Mycoplasma mycoides
646,965
0.53
442,836
204,129
0.32
2.169
3.76
Haemophilus influenzae
1,495,701
0.81
1,256,043
239,658
0.17
5.240
2.39
Escherichia coli
3,478,923
0.74
2,675,846
803,077
0.24
3.331
2.44
Pseudomonas aeruginosa
2,949,852
0.47
1,799, 637
1,150,215
0.39
1.564
3.88
Saccharomyces cerevisiae
6,597,259
0.54
3,977,392
2,619,867
0.40
1.518
3.08
Sorangium cellulosum
3,863,399
0.29
1,924,969
1,938,430
0.51
0.993
5.73
Homo sapiens chr19
10,735,683
0.19
3,359,705
7,375,978
0.69
0.455
6.99
C. elegans
13,929,915
0.13
3,099,744
10,830,171
0.78
0.286
8.97
D. melanogaster
15,891,212
0.12
1,632,045
14,259,167
0.9
0.114
8.89
