Biology Reference
In-Depth Information
17. Akusjarvi G, Philipson L, Pettersson U (1978)
A protein kinase associated with adenovirus
type 2. Virology 87:276-286
18. Axelrod N (1978) Phosphoproteins of adeno-
virus 2. Virology 87:366-383
19. Blair GE, Russell WC (1978) Identifi cation of
a protein kinase activity associated with human
adenoviruses. Virology 86:157-166
20. Russell WC, Blair GE (1977) Polypeptide
phosphorylation in adenovirus-infected cells.
J Gen Virol 34:19-35
21. Tsuzuki J, Luftig RB (1983) The adenovirus
type 5 capsid protein IIIa is phosphorylated
during an early stage of infection of HeLa cells.
Virology 129:529-533
22. Pettersson U, Sambrook J (1973) Amount of
viral DNA in the genome of cells transformed
by adenovirus type 2. J Mol Biol 73:125-130
23. Bergstrom Lind S, Artemenko KA, Pettersson
U (2012) A strategy for identifi cation of
protein tyrosine phosphorylation. Methods
56:275-283
24. Qoronfl eh MW, Ren L, Emery D, Perr M,
Kaboord B (2003) Use of immunomatrix meth-
ods to improve protein-protein interaction
detection. J Biomed Biotechnol 2003:291-298
25. Choudhary C, Kumar C, Gnad F, Nielsen ML,
Rehman M, Walther TC et al (2009) Lysine
acetylation targets protein complexes and
co-regulates major cellular functions. Science
325:834-840
26. Na CH, Peng J (2012) Analysis of ubiquiti-
nated proteome by quantitative mass spec-
trometry. Methods Mol Biol 893:417-429
27. McDonald CA, Yang JY, Marathe V, Yen TY,
Macher BA (2009) Combining results from
lectin affi nity chromatography and glycocap-
ture approaches substantially improves the cov-
erage of the glycoproteome. Mol Cell
Proteomics 8:287-301
28. Dunn JD, Reid GE, Bruening ML (2010)
Techniques for phosphopeptide enrichment
prior to analysis by mass spectrometry. Mass
Spectrom Rev 29:29-54
29. Zhou H, Watts JD, Aebersold R (2001) A sys-
tematic approach to the analysis of protein
phosphorylation.
Nat
Biotechnol
19:
375-378
30. Goshe MB, Conrads TP, Panisko EA, Angell
NH, Veenstra TD, Smith RD (2001)
Phosphoprotein isotope-coded affi nity tag
approach for isolating and quantitating phos-
phopeptides in proteome-wide analyses. Anal
Chem 73:2578-2586
31. Thingholm TE, Jorgensen TJ, Jensen ON,
Larsen MR (2006) Highly selective enrichment
of phosphorylated peptides using titanium
dioxide. Nat Protoc 1:1929-1935
32. Zhang Z, Smith DL, Smith JB (2001) Multiple
separations facilitate identifi cation of protein
variants by mass spectrometry. Proteomics
1:1001-1009
33. Rappsilber J, Mann M, Ishihama Y (2007)
Protocol for micro-purifi cation, enrichment,
pre-fractionation and storage of peptides for
proteomics using StageTips. Nat Protoc
2:1896-1906
34. Kinter M, Sherman NE (2000) Protein
sequencing and identifi cation using tandem
mass spectrometry. John Wiley & Sons, Inc.,
New York. ISBN-13: 978-0-471-32249-8
35. Schwartz D, Church GM (2010) Collection
and motif-based prediction of phosphorylation
sites in human viruses. Sci Signal 3:rs2
36. Gregori J, Villarreal L, Mendez O, Sanchez A,
Baselga J, Villanueva J (2012) Batch effects cor-
rection improves the sensitivity of signifi cance
tests in spectral counting-based comparative dis-
covery proteomics. J Proteomics 75:3938-3951
37. Yeung YG, Nieves E, Angeletti RH, Stanley ER
(2008) Removal of detergents from protein
digests for mass spectrometry analysis. Anal
Biochem 382:135-137
38. Yu YQ, Gilar M, Lee PJ, Bouvier ES, Gebler JC
(2003) Enzyme-friendly, mass spectrometry-
compatible surfactant for in-solution enzymatic
digestion
of
proteins.
Anal
Chem
75:6023-6028
39. Jiménez CR, Huang L, Qiu Y, Burlingame AL
(1998) Sample preparation for MALDI mass
analysis of peptides and proteins. Curr Protoc
Protein Sci 16.13.11-16.13.16
