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sional gel electrophoresis images. Appl Micro-
biol Biotechnol 76:1223-1243
7. Core Team R (2012) R: a language and envi-
ronment for statistical computing. R
Foundation for Statistical Computing, Vienna,
Austria. ISBN 3-900051-07-0
8. Sun X, Weckwerth W (2012) COVAIN: a tool-
box for uni- and multivariate statistics, time-
series and correlation network analysis and
inverse estimation of the differential Jacobian
from
15. Morgenthal K, Wienkoop S, Scholz M et al
(2005) Correlative GC-TOF-MS-based
metabolite profiling and LC-MS-based pro-
tein profiling reveal time-related systemic
regulation of metabolite-protein networks
and improve pattern recognition for multiple
biomarker
selection.
Metabolomics
1:109-121
16. Lê Cao K-A, Boitard S, Besse P (2011) Sparse
PLS Discriminant Analysis: biologically rele-
vant feature selection and graphical displays for
multiclass problems. BMC Bioinformatics
22:253
17. Meunier B, Dumas E, Piec I et al (2007)
Assessment of hierarchical clustering method-
ologies for protemic data mining. J Proteome
Res 6:358-366
18. Zhou J-Y, Schepmoes AA, Zhang X et al
(2010) Improved LC-MS/MS spectral count-
ing statistics by recovering low-scoring spectra
matched to confidently identified peptide
sequences. J Proteome Res 9:5698-5704
19. Peng J, Elias JE, Thoreen CC et al (2002)
Evaluation of multidimensional chromatogra-
phy coupled with tandem mass spectrometry
(LC/LC-MS/MS) for large-scale protein anal-
ysis: the yeast proteome. J Proteome Res
2:43-50
20. Valledor L, Recuenco L, Egelhofer V et al (2012)
The different proteomes of Chlamydomonas
reinhardtii . J Proteomics 75:5883-5887
21. Paoletti AC, Parmely TJ, Tomomori-Sato C
et al (2006) Quantitative proteomic analysis of
distinct mammalian Mediator complexes using
normalized spectral abundance factors. Proc
Natl Acad Sci USA 103:18928-18933
metabolomics
covariance
data.
Metabolomics 8:S81-S93
9. Horgan GW (2007) Sample size and replica-
tion in 2D gel electrophoresis studies.
J Proteome Res 6:2884-2887
10. Valledor L, Castillejo MA, Lenz C et al (2008)
Proteomic analysis of Pinus radiata needles:
2-DE Map and protein identification by LC/
MS/MS and substitution-tolerant database
searching. J Proteome Res 7:2616-2631
11. Fay MP, Proschan MA (2009) Wilcoxon-
Mann-Whitney or t-test? On assumptions for
hypothesis tests and multiple interpretation of
decision rules. Stat Surv 4:1-39
12. Benjamini Y, Hochberg Y (1995) Controlling
the false discovery rate: a practical and powerful
approach to multiple testing. J R Stat Soc Ser B
57:289-300
13. Nedenskov Jensen K, Jessen F, Jørgensen BM
(2008) Multivariate data analysis of two-
dimensional gel electrophoresis protein pat-
terns from few samples. J Proteome Res
7:1288-1296
14. Safavi H, Correa N, Xiong W et al (2008)
Independent component analysis of 2-D electro-
phoresis gels. Electrophoresis 29:4017-4026
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