Biology Reference
In-Depth Information
proteomic identifi cations by liquid
chromatography-tandem mass spectrometry. J
Proteome Res 9:761-776
24. Anderson NG, Anderson NL (1978) Analytical
techniques for cell fractions. 21. 2-Dimensional
analysis of serum and tissue proteins—multiple
isoelectric-focusing.
37. Catala C, Howe KJ, Hucko S et al (2011)
Towards characterization of the glycopro-
teome of tomato (Solanum lycopersicum) fruit
using Concanavalin A lectin affi nity chroma-
tography and LC-MALDI-MS/MS analysis.
Proteomics 11:1530-1544
38. Zhang Y, Giboulot A, Zivy M et al (2011)
Combining various strategies to increase the
coverage of the plant cell wall glycoproteome.
Phytochemistry 72:1109-1123
39. Komatsu S, Yamada E, Furukawa K (2009)
Cold stress changes the concanavalin A-positive
glycosylation pattern of proteins expressed in
the basal parts of rice leaf sheaths. Amino Acids
36:115-123
40. Ishigami A, Ohsawa T, Hiratsuka M et al
(2005) Abnormal accumulation of citrulli-
nated proteins catalyzed by peptidylarginine
deiminase in hippocampal extracts from
patients with Alzheimer's disease. J Neurosci
Res 80:120-128
41. Job C, Rajjou L, Lovigny Y et al (2005)
Patterns of protein oxidation in Arabidopsis
seeds and during germination. Plant Physiol
138:790-802
42. Castegna A, Thongboonkerd V, Klein JB et al
(2003) Proteomic identifi cation of nitrated
proteins in Alzheimer's disease brain. J
Neurochem 85:1394-1401
43. Kanski J, Behring A, Pelling J et al (2005)
Proteomic identifi cation of 3-nitrotyrosine-
containing rat cardiac proteins: effects of bio-
logical aging. Am J Physiol Heart Circ Physiol
288:H371-H381
44. Perluigi M, Fai PH, Hensley K et al (2005)
Proteomic analysis of 4-hydroxy-2-nonenal-
modifi ed proteins in G93A-SOD1 transgenic
mice—a model of familial amyotrophic lateral
sclerosis. Free Radic Biol Med 38:960-968
45. Reed TT, Pierce WM, Markesbery WR et al
(2009) Proteomic identifi cation of HNE-
bound proteins in early Alzheimer disease:
insights into the role of lipid peroxidation in
the progression of AD. Brain Res 1274:66-76
46. Parker KC, Garrels JI, Hines W et al (1998)
Identifi cation of yeast proteins from two-
dimensional gels: working out spot cross-
contamination. Electrophoresis 19:1920-1932
47. Westbrook JA, Yan JX, Wait R et al (2001)
Zooming-in on the proteome: very narrow-
range immobilised pH gradients reveal more
protein species and isoforms. Electrophoresis
22:2865-2871
48. Sarma AD, Emerich DW (2006) A compara-
tive proteomic evaluation of culture grown vs
nodule isolated Bradyrhizobium japonicum.
Proteomics 6:3008-3028
Anal
Biochem
85:331-340
25. Anderson NL, Anderson NG (1978) Analytical
techniques for cell fractions .22. 2-Dimensional
analysis of serum and tissue proteins—multiple
gradient-slab
gel-electrophoresis.
Anal
Biochem 85:341-354
26. Gorg A, Postel W, Gunther S (1988)
Methodology of Ipg-Dalt for the analysis of cell
lysates and tissue proteins. Electrophoresis 9:628
27. Natera SHA, Guerreiro N, Djordjevic MA
(2000) Proteome analysis of differentially dis-
played proteins as a tool for the investigation
of symbiosis. Mol Plant Microbe Interact
13:995-1009
28. Miller I, Crawford J, Gianazza E (2006)
Protein stains for proteornic applications:
which, when, why? Proteomics 6:5385-5408
29. Patton WF (2000) A thousand points of light:
the application of fl uorescence detection tech-
nologies to two-dimensional gel electrophoresis
and proteomics. Electrophoresis 21:1123-1144
30. Minden JS, Dowd SR, Meyer HE et al (2009)
Difference gel electrophoresis. Electrophoresis
30:S156-S161
31. Bandow JE, Baker JD, Berth M et al (2008)
Improved image analysis workfl ow for 2-D
gels enables large-scale 2-D gel-based pro-
teomics studies—COPD biomarker discovery
study. Proteomics 8:3030-3041
32. Stessl M, Noe CR, Lachmann B (2009)
Infl uence of image-analysis software on quan-
titation of two-dimensional gel electrophoresis
data. Electrophoresis 30:325-328
33. Karp NA, McCormick PS, Russell MR et al
(2007) Experimental and statistical consider-
ations to avoid false conclusions in proteomics
studies using differential in-gel electrophore-
sis. Mol Cell Proteomics 6:1354-1364
34. Thingholm TE, Jensen ON, Larsen MR
(2009) Analytical strategies for phosphopro-
teomics. Proteomics 9:1451-1468
35. Robotti A, Natale M, Albo AG et al (2010)
Acute-phase proteins investigation based on
lectins affi nity capture prior to 2-DE separa-
tion: application to serum from multiple scle-
rosis patients. Electrophoresis 31:2882-2893
36. Ligat L, Lauber E, Albenne C et al (2011)
Analysis of the xylem sap proteome of Brassica
oleracea reveals a high content in secreted pro-
teins. Proteomics 11:1798-1813
