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tures using titanium dioxide microcolumns.
Mol Cell Proteomics 4:873-886
8. Beausoleil SA, Jedrychowski M, Schwartz D
et al (2004) Large-scale characterization of
HeLa cell nuclear phosphoproteins. Proc Natl
Acad Sci USA 101:12130-12135
9. Bodenmiller B, Mueller LN, Mueller M et al
(2007) Reproducible isolation of distinct,
overlapping segments of the phosphopro-
teome. Nat Methods 4:231-237
10. Bergstrom Lind S, Molin M, Savitski MM et al
(2008) Immunoaffi nity enrichments followed
by mass spectrometric detection for studying
global protein tyrosine phosphorylation. J
Proteome Res 7:2897-2910
11. Nakagami H, Sugiyama N, Mochida K et al
(2010) Large-scale comparative phosphopro-
teomics identifi es conserved phosphorylation
sites in plants. Plant Physiol 153:1161-1174
12. Sugiyama N, Nakagami H, Mochida K et al
(2008) Large-scale phosphorylation mapping
reveals the extent of tyrosine phosphorylation
in Arabidopsis. Mol Syst Biol 4:193
13. Ravichandran A, Sugiyama N, Tomita M et al
(2009) Ser/Thr/Tyr phosphoproteome anal-
ysis of pathogenic and non-pathogenic
Pseudomonas
20. Wisniewski JR, Zougman A, Nagaraj N et al
(2009) Universal sample preparation method
for proteome analysis. Nat Methods
6:359-362
21. Nuhse TS, Stensballe A, Jensen ON et al
(2004) Phosphoproteomics of the Arabidopsis
plasma membrane and a new phosphorylation
site database. Plant Cell 16:2394-2405
22. Benschop JJ, Mohammed S, O'Flaherty M
et al (2007) Quantitative phosphoproteomics
of early elicitor signaling in Arabidopsis. Mol
Cell Proteomics 6:1198-1214
23. Nuhse TS, Bottrill AR, Jones AM et al (2007)
Quantitative phosphoproteomic analysis of
plasma membrane proteins reveals regulatory
mechanisms of plant innate immune responses.
Plant J 51:931-940
24. Reiland S, Messerli G, Baerenfaller K et al
(2009) Large-scale Arabidopsis phosphopro-
teome profi ling reveals novel chloroplast
kinase substrates and phosphorylation net-
works. Plant Physiol 150:889-903
25. Grimsrud PA, den Os D, Wenger CD et al
(2010) Large-scale phosphoprotein analysis in
Medicago truncatula roots provides insight
into in vivo kinase activity in legumes. Plant
Physiol 152:19-28
26. Chen Y, Hoehenwarter W, Weckwerth W
(2010) Comparative analysis of phytohormone-
responsive phosphoproteins in Arabidopsis
thaliana using TiO 2 -phosphopeptide enrich-
ment and mass accuracy precursor alignment.
Plant J 63:1-17
27. Kline KG, Barrett-Wilt GA, Sussman MR
(2010) In planta changes in protein phosphor-
ylation induced by the plant hormone abscisic
acid.
species.
Proteomics
9:2764-2775
14. Sugiyama N, Masuda T, Shinoda K et al (2007)
Phosphopeptide enrichment by aliphatic
hydroxy acid-modifi ed metal oxide chroma-
tography for nano-LC-MS/MS in proteomics
applications.
Mol
Cell
Proteomics
6:1103-1109
15. Kyono Y, Sugiyama N, Imami K et al (2008)
Successive and selective release of phosphory-
lated peptides captured by hydroxy acid-
modifi ed metal oxide chromatography.
J Proteome Res 7:4585-4593
16. Ishihama Y, Rappsilber J, Mann M (2006)
Modular stop and go extraction tips with
stacked disks for parallel and multidimensional
peptide
Proc
Natl
Acad
Sci
USA
107:15986-15991
28. Reiland S, Finazzi G, Endler A et al (2011)
Comparative phosphoproteome profi ling
reveals a function of the STN8 kinase in fi ne-
tuning of cyclic electron fl ow (CEF). Proc Natl
Acad Sci USA 108:12955-12960
29. Lan P, Li W, Wen TN et al (2012) Quantitative
phosphoproteome profi ling of iron-defi cient
Arabidopsis roots. Plant Physiol 159:403-417
30. Meyer LJ, Gao J, Xu D et al (2012)
Phosphoproteomic analysis of seed maturation
in Arabidopsis, rapeseed, and soybean. Plant
Physiol 159:517-528
31. Rose CM, Venkateshwaran M, Volkening JD
et al (2012) Rapid phosphoproteomic and
transcriptomic changes in the rhizobia-
legume symbiosis. Mol Cell Proteomics
11:724-744
32. Mayank P, Grossman J, Wuest S et al (2012)
Characterization of the phosphoproteome of
mature Arabidopsis pollen. Plant J 72:89-101
fractionation
in
proteomics.
J Proteome Res 5:988-994
17. Rappsilber J, Ishihama Y, Mann M (2003)
Stop and go extraction tips for matrix-assisted
laser desorption/ionization, nanoelectrospray,
and LC/MS sample pretreatment in pro-
teomics. Anal Chem 75:663-670
18. Rappsilber J, Mann M, Ishihama Y (2007)
Protocol for micro-purifi cation, enrichment,
pre-fractionation and storage of peptides for
proteomics using StageTips. Nat Protoc
2:1896-1906
19. Masuda T, Tomita M, Ishihama Y (2008)
Phase transfer surfactant-aided trypsin diges-
tion for membrane proteome analysis.
J Proteome Res 7:731-740
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