Soybean Proteomics - Plant Proteomics: Methods and Protocols - page 319

23. Hajduch M, Ganapathy A, Stein JW et al
(2005) A systematic proteomic study of seed
fi lling in soybean. Establishment of high-
resolution two-dimensional reference maps,
expression profi les, and an interactive proteome
database. Plant Physiol 137:1397-1419
24. Ahsan N, Nanjo Y, Sawada H et al (2010)
Ozone stress-induced proteomic changes in
leaf total soluble and chloroplast proteins of
soybean reveal that carbon allocation is involved
in adaptation in the early developmental stage.
Proteomics 10:2605-2619
25. Agrawal GK, Thelen JJ (2006) Large scale iden-
tifi cation and quantifi cation profi ling of phos-
phoproteins expressed during seed fi lling in
oilseed rape. Mol Cell Proteomics 5:2044-2059
26. Agrawal GK, Hajduch M, Graham K et al
(2008) In-depth investigation of the soybean
seed-fi lling proteome and comparison with
aparallel study of rapeseed. Plant Physiol 148:
504-518
27. Alam I, Lee DG, Kim KH et al (2010)
Proteome analysis of soybean roots under
waterlogging stress at an early vegetative stage.
J Biosci 35:49-62
28. Komatsu S, Yamamoto R, Nanjo Y et al (2009)
A comprehensive analysis of the soybean genes
and proteins expressed under fl ooding stress
using transcriptome and proteome techniques.
J Proteome Res 8:4766-4778
29. Hashiguchi A, Sakata K, Komatsu S (2009)
Proteome analysis of early-stage soybean seed-
lings under fl ooding stress. J Proteome Res
8:2058-2069
30. Shi F, Yamamoto R, Shimamura S et al (2008)
Cytosolic ascorbate peroxidase 2 (cAPX 2) is
involved in the soybean response to fl ooding.
Phytochemistry 69:1295-1303
31. Mohammadi PP, Moieni A, Hiraga S et al
(2012) Organ-specifi c proteomic analysis of
drought-stressed

low cadmium accumulating soybeans under
cadmium stress. Amino Acids. doi: 10.1007/
s00726-012-1319-6
36. Sobkowiak R, Deckert J (2006) Proteins
induced by cadmium in soybean cells. J Plant
Physiol 163:1203-1206
37. Wan J, Torres M, Ganapathy A et al (2005)
Proteomic analysis of soybean root hairs after
infection by Bradyrhizobium japonicum . Mol
Plant Microbe Interact 18:458-467
38. Hossain Z, Nouri MZ, Komatsu S (2012)
Plant cell organelle proteomics in response to
abiotic stress. J Proteome Res 11:37-48
39. Komatsu S, Kobayashi Y, Nishizawa K et al
(2010) Comparative proteomics analysis of dif-
ferentially expressed proteins in soybean cell
wall during fl ooding stress. Amino Acids 39:
1435-1449
40. Komatsu S, Wada T, Abaléa Y et al (2009)
Analysis of plasma membrane proteome in soy-
bean and application to fl ooding stress

response. J Proteome Res 8:4487-4499
41. Nouri MZ, Komatsu S (2010) Comparative
analysis of soybean plasma membrane proteins
under osmotic stress using gel-based and LC
MS/MS-based proteomics approaches.

Proteomics 10:1930-1945
42. Komatsu S, Yamamoto A, Nakamura T et al
(2011) Comprehensive analysis of mitochon-
dria in roots and hypocotyls of soybean under
fl ooding stress using proteomics and metabolo-
mics techniques. J Proteome Res 10:
3993-4004
43. Arai Y, Hayashi M, Nishimura M (2008)
Proteomic analysis of highly purifi ed peroxi-
somes from etiolated soybean cotyledons. Plant
Cell Physiol 49:526-539
44. Komatsu S, Sugimoto T, Hoshino T et al
(2010) Identifi cation of fl ooding stress respon-
sible cascades in root and hypocotyl of soybean
using proteome analysis. Amino Acids
38:729-738
45. Xu C, Sullivan JH, Garrett WM et al (2008)
Impact of solar ultraviolet-B on the proteome
in soybean lines differing in fl avonoid contents.
Phytochemistry 69:38-48
46. Nanjo Y, Skultety L, Uvá č ková L, Klubicová K,
Hajduch M, Komatsu S (2012) Mass
spectrometry-based analysis of proteomic
changes in the root tips of fl ooded soybean
seedlings. J Proteome Res 11:372-385
47. Sarma AD, Oehrle NW, Emerich DW (2008)
Plant protein isolation and stabilization for
enhanced resolution of two-dimensional poly-
acrylamide gel electrophoresis. Anal Biochem
379:192-195

soybean seedlings. J

Proteomics 75:1906-1923
32. Aghaei K, Ehsanpour AA, Shah AH et al (2009)
Proteome analysis of soybean hypocotyl and
root under salt stress. Amino Acids 36:91-98
33. Sobhanian H, Razavizadeh R, Nanjo Y et al
(2010) Proteome analysis of soybean leaves,
hypocotyls and roots under salt stress.
Proteome Sci 29:8-19
34. Ahsan N, Nakamura T, Komatsu S (2012)
Differential responses of microsomal proteins
and metabolites in two contrasting cadmium-
accumulating soybean cultivars. Amino Acids
42:317-327
35. Hossain Z, Hajika M, Komatsu S (2012)
Comparative proteome analysis of high and