Biology Reference
In-Depth Information
Table 1
Table of results from a GPM search showing the top 20 proteins identifi ed in a previous study, sorted
by log(
e
) value
Identifi er
log(
I
)
rI
log(
e
)
pI
Mr (kDa)
Description
gi|11466795|
9.36
3,512 −1,288
6.22
52.8
RuBisCO large subunit
gi|115468792| 9.17
3,085 −1,057.5 6.95
48
RuBisCO large subunit
gi|115440423| 8.56
1,324
−838.3 8.14
172.7
ATPase delta/epsilon subunit
gi|115481654| 8.65
914
−802.8 5.95
84
ATP synthase beta chain
gi|11466794|
8.65
932
−795.2 5.47
54
ATP synthase CF1 beta subunit
gi|115439533| 7.82
224
−671.8 6.51
111.4
Glycine dehydrogenase
gi|115487804| 9.13
1,678
−634.5 9.01
59
RuBisCO large subunit
gi|115473843| 7.68
182
−590.1 6.04
125.6
Glutamate synthase
gi|115478691| 7.75
727
−560.6 5.14
28
Chlorophyll A-B-binding protein
gi|115438250| 7.72
712
−515.7 5.29
27.5
Chlorophyll A-B-binding protein
gi|11466784|
8.45
844
−508.3 5.95
55.6
ATP synthase CF1 alpha subunit
gi|115439621| 7.59
643
−505.4 5.29
27.9
Chlorophyll A-B-binding protein
gi|115468926| 7.73
191
−501.9 5.98
96.9
Glycine cleavage system P-protein
gi|115466224| 7.98
377
−495.3 5.44
73.4
Thiamine pyrophosphate family,
transketolase
gi|115486823| 8.43
562
−477.3 5.86
47.9
Ribulose-bisphosphate
carboxylase activase
gi|115487910| 7.24
186
−450.5 6.62
102
Clp protease ATP-binding subunit
gi|115436780| 8.1
300
−426.3 6.08
34.8
Manganese-stabilizing protein
gi|115488160| 7.49
153
−423.7 5.12
61.1
GroEL-like type I chaperonin
gi|115438793| 8.41
564
−371.3 8.78
30
Carbonic anhydrase
gi|11466786|
7.96
339
−363.4 6.63
82.5
Photosystem I P700 chlorophyll
a apoprotein A2
The Identifi er indicates the gene identifi er number associated with the protein, and will depend on the origin of
the FASTA database, log(
I
) represents the log sum intensity of the spectra acquired, rI is the number of redun-
dant peptides identifi ed for the protein (used in spectral counting quantitation), log(
e
) is the log expectation
value that the protein match was random, pI is the isoelectric point of the protein, and Mr (kDa) indicates the
mass of the protein
score, log(
e
). From this single experiment, which was first
published as part of a larger data set in Gammulla et al. [
16
], 760
proteins were identifi ed to be common to three replicates at 0.79 %
false discovery rate (FDR) with an average of 37,469 peptides at
0.21 % FDR.
