Metabolic Pathways Analysis: A Linear Algebraic Approach - Mathematical Concepts and Methods in Modern Biology - page 261

8.4 SUPPLEMENTARY DATA
Supplementary files and materials associated with this article can be found from the
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References
[1] Voet D, Voet J. Biochemistry. Wiley and Sons; 2004.
[2] Ackerman, J. How Bacteria in Our Bodies Protect Our Health, Scientific
American, June 2012.
[3] <http://commons.wikimedia.org/wiki/File:Glucokinase-1GLK.png?useFormat
=mobile> [as of July 2012].
[4] <http://upload.wikimedia.org/wikipedia/commons/archive/a/a0/20091114111
50621Glycolysis.svg [as of July 2012].
[5] Wiback S, Palsson O. Extreme pathway analysis of red blood cell metabolism.
Biophys J 2002;83:808-18.
[6] Schilling CH, Palsson BO. The underlying pathway structure of biochemical
reaction networks. PNAS 1998;95:4193-8.
[7] Schilling CH, Schuster S, Palsson BO, Heinrich R. Metabolic pathway analysis:
basic concepts and scientific applications in the post-genomic era. Biotechnol
Prog 1999;15:296-303.
[8] Famili I, Palsson BO. The convex basis of the left null space of the stoichiometric
matrix leads to the definition of metabolically meaningful pools. Biophys J
2003;224:16-26.
[9] Famili I, Palsson BO. Systematic metabolic reactions are obtained by singu-
lar value decomposition of genome-scale stoichiometric matrices. J Theor Biol
2003;224:87-96.
[10] Lee SY, Hong SH, Moon SY. In silico metabolic pathway analysis and design:
succinic acid production by metabolically engineered Escherichia coli as an
example. Genome Informatics 2002;13:214-23.
[11] Maertens J, Vanrolleghem PA. Modeling with a view to target identification in
metabolic engineering: a critical evaluation of the available tools. Biotechnol
Prog 2010;26:313-31.
[12] Llaneras F, Picó J. Which metabolic pathways generate and characterize the flux
space? A comparison among elementary modes, extreme pathways and minimal
generators. J BiomedBiotech 2010. 13 pages. doi:10.1155/2010/753904 [Article
ID 753904].
[13] Schuster S, Dandekar T, Fell DA. Detection of elementary flux modes in bio-
chemical networks: a promising tool for pathway analysis and metabolic engi-
neering. Trends Biotechnol 1999;17:53-60.
[14] CraciunG. Graph theoretic approaches to injectivity in general chemical reaction
systems (with Murad Banaji). Adv Appl Math 2010;44:168-84.