Comparative genomics of pathogenic Escherichia coli - Escherichia coli: Pathotypes and Principles of Pathogenesis - page 36

complete complement of virulence genes and antibiotic resistance profiles,
can help tailor specific treatments. A complete understanding of E. coli
and Shigella genomics will build the foundation for these types of clinical
applications.
ACKNOWLEDGMENTS
The work included in this chapter was funded in part by federal funds from the National
Institute of Allergy and Infectious Diseases, National Institutes of Health, grant numbers RO1
AI089894 and 1RC4AI092828.
REFERENCES
Angiuoli, S.V., Salzberg, S.L., 2011. Mugsy: fast multiple alignment of closely related whole
genomes. Bioinformat. 27, 334-342 .
Bernier, C., Gounon, P., Le Bouguenec, C., 2002. Identiication of an aggregative adhesion imbria
(AAF) type III-encoding operon in enteroaggregative Escherichia coli as a sensitive probe for
detecting the AAF-encoding operon family. Infect. Immun. 70, 4302-4311 .
Bieber, D., Ramer, S.W., Wu, C.Y., et al., 1998. Type IV pili, transient bacterial aggregates, and
virulence of enteropathogenic Escherichia coli . Science 280, 2114-2118 .
Bilge, S.S., Clausen, C.R., Lau, W., Moseley, S.L., 1989. Molecular characterization of a imbrial
adhesin, F1845, mediating diffuse adherence of diarrhea-associated Escherichia coli to HEp-2
cells. J. Bacteriol. 171, 4281-4289 .
Blattner, F.R., Plunkett 3rd, G., Bloch, C.A., et al., 1997. The complete genome sequence of Esch-
erichia coli K-12. Science 277, 1453-1462 .
Boisen, N., Ruiz-Perez, F., Scheutz, F., Krogfelt, K.A., Nataro, J.P., 2009. Short report: high
prevalence of serine protease autotransporter cytotoxins among strains of enteroaggregative
Escherichia coli . Am. J. Trop. Med. Hyg. 80, 294-301 .
Boisen, N., Scheutz, F., Rasko, D.A., et al., 2012. Genomic characterization of enteroaggregative
Escherichia coli from children in Mali. J. Infect. Dis. 205, 431-444 .
Bruen, T.C., Philippe, H., Bryant, D., 2006. A simple and robust statistical test for detecting the
presence of recombination. Genetics 172, 2665-2681 .
Brzuszkiewicz, E., Bruggemann, H., Liesegang, H., et al., 2006. How to become a uropathogen:
comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains. Proc. Nat.
Acad. Sci. USA 103, 12879-12884 .
Campbell, A., Schneider, S.J., Song, B., 1992. Lambdoid phages as elements of bacterial genomes
(integrase/phage21/ Escherichia coli K-12/icd gene). Genetica 86, 259-267 .
Chaudhuri, R.R., Sebaihia, M., Hobman, J.L., et al., 2010. Complete genome sequence and com-
parative metabolic proiling of the prototypical enteroaggregative Escherichia coli strain 042.
PloS One 5, e8801 .
Chen, S.L., Hung, C.S., Xu, J., et al., 2006. Identiication of genes subject to positive selection in
uropathogenic strains of Escherichia coli : a comparative genomics approach. Proc. Natl. Acad.
Sci. USA 103, 5977-5982 .
Corrigan Jr., J.J., Boineau, F.G., 2001. Hemolytic-uremic syndrome. Pediatr. Rev. 22, 365-369 .
Crossman, L.C., Chaudhuri, R.R., Beatson, S.A., et al., 2010. A commensal gone bad: complete
genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J. Bac-
teriol. 192, 5822-5831 .