Chemistry Reference
In-Depth Information
where D is the energy well-depth and
is related to the stretching force constant of
the bond. The Morse potential is more suitable to describe bond stretching than the
simple harmonic potential [ 53 ]. Note that (20) is a good approximation of (21) in
the case of small r ij .
a
2.2.2 Angle Bending
Angle bending interactions occur when an angle formed by three consecutive sites
is perturbed from its equilibrium value. Several potentials are employed to describe
this energy contribution. However, the majority of force fields is based on the
harmonic potential [ 54 ]
1
2 k y ðy y 0 Þ
2
u har
angle ðyÞ¼
(22)
or the trigonometric potential
1
2 k y ð
2
u cos
angle ðyÞ¼
cos
ðyÞ
cos
ðy 0 ÞÞ
;
(23)
where
y 0 is its
equilibrium value. The bending force constant k y is typically smaller than the bond
force constant k ij , because the energy required to distort an angle from its equilib-
rium value is lower than that required to stretch a bond [ 19 ].
y
is the angle formed by three consecutive sites; cf. Fig. 2 , and
2.2.3 Torsional Rotation Terms
Many of the major changes in molecular conformations are due to bond rotations.
The torsion interactions account for the rotation around bonds of four adjacent sites
or the motion of dihedral angles. The torsional potentials are 2
p
-periodic and
symmetric at 0 and
p
. For alkanes, the Ryckaert and Belleman [ 55 ] torsional
potential is often used:
r
ϕ
ψ
θ
Fig. 2 Schematic representation of the intramolecular coordinates: bond length r , bending angle
y
, torsional dihedral angle
'
, and improper dihedral angle
c
 
Search WWH ::




Custom Search