Biology Reference
In-Depth Information
40. Moon TS, Yoon SH, Lanza AM, Roy-Mayhew JD, Prather KLJ. Production of glucaric acid from a synthetic
pathway in recombinant
Escherichia coli
.
Appl Environ Microbiol
. 2009;75:4660.
41.
Jones KL, Kim SW, Keasling JD. Low-copy plasmids can perform as well as or better than high-copy plasmids
for metabolic engineering of bacteria.
Metab Eng
. 2000;2:328
338.
42. La Clair JJ, Foley TL, Schegg TR, Regan CM, Burkart MD. Manipulation of carrier proteins in antibiotic
biosynthesis.
Chem Biol
. 2004;11:195
201.
43. Alper H, Miyaoku K, Stephanopoulos G. Construction of lycopene-overproducing
E. coli
strains by combining
systematic and combinatorial gene knockout targets.
Nat Biotechnol
. 2005;23:612
616.
44. Tyo KEJ, Ajikumar PK, Stephanopoulos G. Stabilized gene duplication enables long-term selection-free
heterologous pathway expression.
Nat Biotechnol
. 2009;27:760
765.
45. Gustafsson C, Govindarajan S, Minshull J. Codon bias and heterologous protein expression.
Trends Biotechnol
.
2004;22:346
353.
46. Ernst JF. Codon usage and gene expression.
Trends Biotechnol
. 1988;6:196
199.
47. Ikemura T. Codon usage and transfer-RNA content in unicellular and multicellular organisms.
Mol Biol Evol
.
1985;2:13
34.
48. Grosjean H, Fiers W. Preferential codon usage in prokaryotic genes
the optimal codon anticodon interaction
energy and the selective codon usage in efficiently expressed genes.
Gene
. 1982;18:199
209.
49. Ikemura T. Correlation between the abundance of E
scherichia coli
transfer-RNAs and the occurrence of the
respective codons in its protein genes
a proposal for a synonymous codon choice that is optimal for
the
Escherichia coli
translational system.
J Mol Biol
. 1981;151:389
409.
50. Kink JA, Maley ME, Ling KY, Kanabrocki JA, Kung C. Efficient expression of the paramecium calmodulin gene
in
Escherichia coli
after 4 TAA-to-CAA changes through a series of polymerase chain-reactions.
J Protozool
.
1991;38:441
447.
51. Nambiar KP, Stackhouse J, Stauffer DM, Kennedy WP, Eldredge JK, Benner SA. Total synthesis and cloning of a
gene coding for the ribonuclease-s protein.
Science
. 1984;223:1299
1301.
52. Tokuoka M, Tanaka M, Ono K, Takagi S, Shintani T, Gomi K. Codon optimization increases steady-
state mRNA levels in
Aspergillus oryzae
heterologous gene expression.
Appl Environ Microbiol
.
2008;74:6538
6546.
53. Martin VJJ, Pitera DJ, Withers ST, Newman JD, Keasling JD. Engineering a mevalonate pathway in
Escherichia
coli
for production of terpenoids.
Nat Biotechnol
. 2003;21:796
59
802.
54. Smolke CD, Carrier TA, Keasling JD. Coordinated, differential expression of two genes through directed mRNA
cleavage and stabilization by secondary structures.
Appl Environ Microbiol
. 2000;66:5399
5405.
55. Pfleger BF, Pitera DJ, Smolke CD, Keasling JD. Combinatorial engineering of intergenic regions in operons
tunes expression of multiple genes.
Nat Biotechnol
. 2006;24:1027
1032.
56. Paul BJ, Ross W, Gaal T, Gourse RL. rRNA transcription in
Escherichia coli
.
Annu Rev Genet
.
2004;38:749
770.
57. Alper H, Fischer C, Nevoigt E, Stephanopoulos G. Tuning genetic control through promoter engineering.
PNAS
.
2005;102:12678
12683.
58. Du J, Yuan Y, Si T, et al. Customized optimization of metabolic pathways by combinatorial transcriptional
engineering (COMPACTER).
Nucleic Acids
Res. 2012;40:e142.
59. Farmer WR, Liao JC. Improving lycopene production in
Escherichia coli
by engineering metabolic control.
Nat Biotechnol
. 2000;18:533
537.
60. Fung E, Wong WW, Suen JK, Bulter T, Lee SG, Liao JC. A synthetic gene-metabolic oscillator.
Nature
.
2005;435:118
122.
61. Basu S, Gerchman Y, Collins CH, Arnold FH, Weiss R. A synthetic multicellular system for programmed pattern
formation.
Nature
. 2005;434:1130
1134.
62. Anderson JC, Voigt CA, Arkin AP. Environmental signal integration by a modular AND gate.
Mol Syst Biol
.
2007;3:133.
63. Salis HM, Mirsky EA, Voigt CA. Automated design of synthetic ribosome binding sites to control protein
expression.
Nat Biotechnol
. 2009;27:946
950.
64. Leonard E, Ajikumar PK, Thayer K, et al. Combining metabolic and protein engineering of a terpenoid
biosynthetic pathway for overproduction and selectivity control.
PNAS
. 2010;107:13654
13659.
65. Zhang KC, Sawaya MR, Eisenberg DS, Liao JC. Expanding metabolism for biosynthesis of nonnatural alcohols.
PNAS
. 2008;105:20653
20658.
66. Berrios-Rivera SJ, Bennett GN, San KY. Metabolic engineering of
Escherichia coli
: increase of NADH availability
by overexpressing an NAD(
229.
67. Bro C, Regenberg B, Forster J, Nielsen J.
In silico
aided metabolic engineering of
Saccharomyces cerevisiae
for
improved bioethanol production.
Metab Eng
. 2006;8:102
)-dependent formate dehydrogenase.
Metab Eng
. 2002;4:217
1
111.
