Biology Reference
In-Depth Information
13. Link AJ, Mock ML, Tirrell DA. Non-canonical amino acids in protein engineering.
Curr Opin Biotechnol
.
2003;14:603
609.
14. Cedrone F, Ménez A, Quéméneur E. Tailoring new enzyme functions by rational redesign.
Curr Opin Struct Biol
.
2000;10:405
410.
15. Yang W, Jones LM, Isley L, et al. Rational design of a calcium-binding protein.
J Am Chem Soc
.
2003;125:6165
6171.
16. Fersht A.
Protein stability
.
Structure and Mechanism in Protein Science: A Guide to Enzyme Catalysis and Protein
Folding
. New York: W.H. Freeman; 1999:508
539.
17. Doudney C, Haas F. Mutation induction and macromolecular synthesis in bacteria.
Proc Natl Acad Sci USA
.
1959;45:709
772.
18. Ong T, De Serres F. Mutagenicity of chemical carcinogens in
Neurospora crassa
.
Cancer Res
. 1972;32:1890
1893.
19. Myers RM, Lerman LS, Maniatis T. A general method for saturation mutagenesis of cloned DNA fragments.
Science
. 1985;229:242
247.
20. Lai YP, Huang J, Wang LF, Li J, Wu ZR. A new approach to random mutagenesis in vitro.
Biotechnol Bioeng
.
2004;86:622
627.
21. Muteeb G, Sen R. Random mutagenesis using a mutator strain.
Methods Mol Biol
. 2010;634:411
419.
22. Cirino PC, Mayer KM, Umeno D. Generating mutant libraries using error-prone PCR.
Methods Mol Biol
.
2003;231:3
10.
23. Fujii R, Kitaoka M, Hayashi K. One-step random mutagenesis by error-prone rolling circle amplification.
Nucleic Acids Res
. 2004;32:e145.
24. Stemmer WPC. Rapid evolution of a protein in vitro by DNA shuffling.
Nature
. 1994;370:389
391.
25. Chang CCJ, Chen TT, Cox BW, et al. Evolution of a cytokine using DNA family shuffling.
Nat Biotechnol
.
1999;17:793
797.
26. Ness JE, Welch M, Giver L, et al. DNA shuffling of subgenomic sequences of subtilisin.
Nat Biotechnol
.
1999;17:893
896.
27. Aguinaldo AM, Arnold FH. Staggered extension process (StEP) in vitro recombination.
Methods Mol Biol
.
2003;231:105
110.
28. Esteban O, Woodyer RD, Zhao H. In vitro DNA recombination by random priming.
Methods Mol Biol
.
2003;231:99
40
104.
29. Coco WM. RACHITT: gene family shuffling by random chimeragenesis on transient templates.
Methods Mol
Biol
. 2003;231:111
127.
30. Abécassis V, Pompon D, Truan G. Producing chimeric genes by CLERY: in vitro and in vivo recombination.
Methods Mol Biol
. 2003;231:165
173.
31. Wingler LM, Cornish VW. Reiterative recombination for the in vivo assembly of libraries of multigene
pathways.
Proc Natl Acad Sci
. 2011;108:15135
15140.
32. Swers JS, Kellogg BA, Wittrup KD. Shuffled antibody libraries created by in vivo homologous recombination
and yeast surface display.
Nucleic Acids Res
. 2004;32:e36.
33. Mézard C, Pompon D, Nicolas A. Recombination between similar but not identical DNA sequences during
yeast transformation occurs within short stretches of identity.
Cell
. 1992;70:659
670.
34. Ostermeier M, Lutz S. The creation of ITCHY hybrid protein libraries.
Methods Mol Biol
. 2003;231:129
142.
35. Lutz S, Ostermeier M. Preparation of SCRATCHY hybrid protein libraries.
Methods Mol Biol
.
2003;231:143
151.
36. Udit AK, Silberg JJ, Sieber V. Sequence homology-independent protein recombination (SHIPREC).
Methods Mol
Biol
. 2003;231:153
164.
37. Villiers B, Stein V, Hollfelder F. USER friendly DNA recombination (USERec): a simple and flexible near
homology-independent method for gene library construction.
Protein Eng Des Sel
. 2010;23:1
8.
38. Bittker JA, Le BV, Liu JM, Liu DR. Directed evolution of protein enzymes using nonhomologous random
recombination.
Proc Natl Acad Sci USA
. 2004;101:7011
7016.
39. Hiraga K, Arnold FH. General method for sequence-independent site-directed chimeragenesis.
J Mol Biol
.
2003;330:287
296.
40. Meyer MM, Hochrein L, Arnold FH. Structure-guided SCHEMA recombination of distantly related
β
-lactamases.
Protein Eng Des Sel
. 2006;19:563
570.
41. O'Maille PE, Bakhtina M, Tsai MD. Structure-based combinatorial protein engineering (SCOPE).
J Mol Biol
.
2002;321:677
691.
42. Reetz MT, Carballeira JD. Iterative saturation mutagenesis (ISM) for rapid directed evolution of functional
enzymes.
Nat Protoc
. 2007;2:891
903.
