Biology Reference
In-Depth Information
[158] Tian W, Zhang LV, et al. Combining guilt-by-association and
guilt-by-profiling to predict Saccharomyces cerevisiae gene
function. Genome Biol 2008;9(Suppl. 1):S7.
[159] Pena-Castillo L, Tasan M, et al. A critical assessment of Mus
musculus gene function prediction using integrated genomic
evidence. Genome Biol 2008;9(Suppl. 1):S2.
[160] Barabasi AL, Oltvai ZN. Network biology: understanding the
cell's functional organization. Nat Rev Genet 2004;5(2):101 e 13.
[161] Bader GD, Hogue CW. Analyzing yeast protein e protein inter-
action data obtained from different sources. Nat Biotechnol
2002;20(10):991 e 7.
[162] Bar-Joseph Z, Gerber GK, et al. Computational discovery of
gene modules and regulatory networks. Nat Biotechnol 2003;
21(11):1337 e 42.
[178] Goh KI, Cusick ME, et al. The human disease network. Proc Natl
Acad Sci U S A 2007;104(21):8685
90.
[179] D'Andrea AD. Susceptibility pathways in Fanconi's anemia and
breast cancer. N Engl J Med 2010;362(20):1909
e
19.
[180] Wang W. Emergence of a DNA-damage response network con-
sisting of Fanconi anaemia and BRCA proteins. Nat Rev Genet
2007;8(10):735 e 48.
[181] Camargo LM, Collura V, et al. Disrupted in Schizophrenia 1
interactome: evidence for the close connectivity of risk genes and
a potential synaptic basis for schizophrenia. Mol Psychiatry
2007;12(1):74 e 86.
[182] Kaltenbach LS, Romero E, et al. Huntingtin interacting proteins
are genetic modifiers of neurodegeneration. PLoS Genet
2007;3(5):e82.
[183] Sakai Y, Shaw CA, et al. Protein interactome reveals converging
molecular pathways among autism disorders. Sci Transl Med
2011;3(86). 86ra49.
[184] Zhong Q, Simonis N, et al. Edgetic perturbation models of human
inherited disorders. Mol Syst Biol 2009;5:321.
[185] Dreze M, Charloteaux B, et al. 'Edgetic' perturbation of a
C.elegans BCL2 ortholog. Nat Methods 2009;6(11):843 e 9.
[186] Griffiths A, Miller J, et al. An Introduction to Genetic Analysis.
New York, W. H. Freeman; 2000.
[187] Charloteaux B, Zhong Q, et al. Protein-protein interactions and
networks: forward and reverse edgetics. Methods Mol Biol
2011;759:197
e
[163]
Ihmels J, Friedlander G, et al. Revealing modular organization
in the yeast
transcriptional network. Nat Genet 2002;31(4):
370 e 7.
[164] Stuart JM, Segal E, et al. A gene-coexpression network for global
discovery
of
conserved
genetic modules. Science
2003;
302(5643):249 e 55.
[165] Tornow S, Mewes HW. Functional modules by relating protein
interaction networks and gene expression. Nucleic Acids Res
2003;31(21):6283 e 9.
[166] Lim J, Crespo-Barreto J, et al. Opposing effects of polyglutamine
expansion on native protein complexes contribute to SCA1.
Nature 2008;452(7188):713
8.
[167] Aerts S, Lambrechts D, et al. Gene prioritization through genomic
data fusion. Nat Biotechnol 2006;24(5):537
213.
[188] Endoh H, Walhout AJ, et al. A green fluorescent protein-based
reverse two-hybrid system: application to the characterization of
large numbers of potential protein-protein interactions. Methods
Enzymol 2000;328:74 e 88.
[189] Milo R, Itzkovitz S, et al. Superfamilies of evolved and designed
networks. Science 2004;303(5663):1538 e 42.
[190] Hanein D, Matlack KE, et al. Oligomeric rings of the Sec61p
complex induced by ligands required for protein translocation.
Cell 1996;87(4):721 e 32.
[191] Geissler S, Siegers K, et al. A novel protein complex promoting
formation of functional alpha- and gamma-tubulin. EMBO J
1998;17(4):952 e 66.
[192] Choudhary C, Mann M. Decoding signalling networks by mass
spectrometry-based proteomics. Nat Rev Mol Cell Biol 2010;
11(6):427 e 39.
[193] Bisson N, James DA, et al. Selected reaction monitoring mass
spectrometry reveals the dynamics of signaling through the GRB2
adaptor. Nat Biotechnol 2011;29(7):653 e 8.
[194] Barrios-Rodiles M, Brown KR, et al. High-throughput mapping of
a dynamic signaling network in mammalian cells. Science
2005;307(5715):1621 e 5.
[195] Ge H, Liu Z, et al. Correlation between transcriptome and inter-
actome mapping data from Saccharomyces cerevisiae. Nat Genet
2001;29(4):482
e
e
44.
[168] Franke L, van Bakel H, et al. Reconstruction of a functional
human gene network, with an application for prioritizing
positional candidate genes. Am J Hum Genet 2006;78(6):
1011 e 25.
[169] George RA, Liu JY, et al. Analysis of protein sequence and
interaction data for candidate disease gene prediction. Nucleic
Acids Res 2006;34(19):e130.
[170] Oti M, Snel B, et al. Predicting disease genes using protein e
protein interactions. J Med Genet 2006;43(8):691 e 8.
[171] Tiffin N, Adie E, et al. Computational disease gene identifica-
tion: a concert of methods prioritizes type 2 diabetes and
obesity candidate genes. Nucleic Acids Res 2006;34(10):
3067 e 81.
[172] Lee I, Blom UM, et al. Prioritizing candidate disease genes by
network-based boosting of genome-wide
e
association data.
Genome Res 2011;21(7):1109 e 21.
[173] Tasan M, Drabkin HJ, et al. A resource of quantitative functional
annotation for Homo sapiens genes. G3 (Bethesda) 2012;2(2):
223 e 33.
[174] Raychaudhuri S, Plenge RM, et al. Identifying relationships among
genomic disease regions: predicting genes at pathogenic SNP
associations and rare deletions. PLoS Genet 2009;5(6):e1000534.
[175] Albert R, Jeong H, et al. Error and attack tolerance of complex
networks. Nature 2000;406(6794):378
6.
[196] Simonis N, Gonze D, et al. Modularity of the transcriptional
response of protein complexes in yeast. J Mol Biol 2006;363(2):
589
e
82.
[176] Jeong H, Mason SP, et al. Lethality and centrality in protein
networks. Nature 2001;411(6833):41 e 2.
[177] Zotenko E, Mestre J, et al. Why do hubs in the yeast protein
interaction network tend to be essential: reexamining the
connection between the network topology and essentiality. PLoS
Comput Biol 2008;4(8):e1000140.
e
610.
[197] Simonis N, van Helden J, et al. Transcriptional regulation of
protein complexes in yeast. Genome Biol 2004;5(5):R33.
[198] Hannum G, Srivas R, et al. Genome-wide association data reveal
a global map of genetic interactions among protein complexes.
PLoS Genet 2009;5(12):e1000782.
e
Search WWH ::




Custom Search