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[26] Kaushansky A, Allen JE, et al. Quantifying protein
protein
interactions in high throughput using protein domain microarrays.
Nat Protoc 2010;5(4):773 e 90.
[27] Linding R, Jensen LJ, et al. Systematic discovery of in vivo
phosphorylation networks. Cell 2007;129(7):1415 e 26.
[28] Ma'ayan A, Jenkins SL, et al. Formation of regulatory patterns
during signal propagation in a mammalian cellular network.
Science 2005;309(5737):1078 e 83.
[29] Ptacek J, Devgan G, et al. Global analysis of protein phosphor-
ylation in yeast. Nature 2005;438(7068):679 e 84.
[30] Roberts PM. Mining literature for systems biology. Brief Bio-
inform 2006;7(4):399 e 406.
[31] Marcotte E, Date S. Exploiting big biology: integrating large-
scale biological data for function inference. Brief Bioinform
2001;2(4):363 e 74.
[32] Walhout AJ, Vidal M. Protein interaction maps for model
organisms. Nat Rev Mol Cell Biol 2001;2(1):55 e 62.
[33] Cusick ME, Yu H, et al. Literature-curated protein interaction
datasets. Nat Methods 2009;6(1):39 e 46.
[34] Turinsky AL, Razick S, et al. Literature curation of protein
interactions: measuring agreement across major public databases.
Database 2010 (Oxford) 2010: baq026.
[35] Turinsky AL, Razick S, et al. Interaction databases on the same
page. Nat Biotechnol 2011;29(5):391 e 3.
[36] Venkatesan K, Rual JF, et al. An empirical framework for binary
interactome mapping. Nat Methods 2009;6(1):83
[49] Uetz P, Giot L, et al. A comprehensive analysis of protein
protein
interactions in Saccharomyces cerevisiae. Nature 2000;403(6770):
623 e 7.
[50] Li S, Armstrong CM, et al. A map of the interactome network of
the metazoan C. elegans. Science 2004;303(5657):540 e 3.
[51] Reboul J, Vaglio P, et al. C. elegans ORFeome version 1.1:
experimental verification of the genome annotation and resource for
proteome-scale protein expression. Nat Genet 2003;34(1):35 e 41.
[52] Simonis N, Rual JF, et al. Empirically controlled mapping of the
Caenorhabditis elegans protein e protein interactome network.
Nat Methods 2009;6(1):47 e 54.
[53] Walhout AJ, Sordella R, et al. Protein interaction mapping in
C. elegans using proteins involved in vulval development. Science
2000;287(5450):116 e 22.
[54] Giot L, Bader JS, et al. A protein interaction map of Drosophila
melanogaster. Science 2003;302(5651):1727 e 36.
[55] Arabidopsis interactome mapping consortium. Evidence for
network evolution in an Arabidopsis interactome map. Science
2011;333(6042):601 e 7.
[56] Lalonde S, Sero A, et al. A membrane protein/signaling protein
interaction network for Arabidopsis version AMPv2. Front
Physiol 2010;1:24.
[57] Mukhtar MS, Carvunis AR, et al. Independently evolved viru-
lence effectors converge onto hubs in a plant immune system
network. Science 2011;333(6042):596
e
e
601.
[58] Colland F, Jacq X, et al. Functional proteomics mapping of
a human signaling pathway. Genome Res 2004;14(7):1324
e
90.
[37] Edwards AM, Isserlin R, et al. Too many roads not taken. Nature
2011;470(7333):163
e
32.
e
5.
[38] Vousden KH, Lane DP. p53 in health and disease. Nat Rev Mol
Cell Biol 2007;8(4):275 e 83.
[39] Yu H, Braun P, et al. High-quality binary protein interaction map
of
[59] Lim J, Hao T, et al. A protein
protein interaction network for
human inherited ataxias and disorders of Purkinje cell degenera-
tion. Cell 2006;125(4):801 e 14.
[60] Rual JF, Venkatesan K, et al. Towards a proteome-scale map of
the human protein e protein interaction network. Nature 2005;
437(7062):1173 e 8.
[61] Stelzl U, Worm U, et al. A human protein e protein interaction
network: a resource for annotating the proteome. Cell 2005;
122(6):957 e 68.
[62] Yu H, Tardivo L, et al. Next-generation sequencing to generate
interactome datasets. Nat Methods 2011;8(6):478 e 80.
[63] Zhu H, Bilgin M, et al. Global analysis of protein activities using
proteome chips. Science 2001;293(5537):2101 e 5.
[64] Dreze M, Monachello D, et al. High-quality binary interactome
mapping. Methods Enzymol 2010;470:281 e 315.
[65] Fields S, Song O. A novel genetic system to detect protein-protein
interactions. Nature 1989;340(6230):245 e 6.
[66] Durfee T, Becherer K, et al. The retinoblastoma protein associates
with the protein phosphatase type 1 catalytic subunit. Genes Dev
1993;7(4):555 e 69.
[67] Gyuris J, Golemis E, et al. Cdi1, a human G1 and S phase protein
phosphatase that associates with Cdk2. Cell 1993;75(4):791
e
e
the yeast
interactome network. Science 2008;322(5898):
104 e 10.
[40] Bartel PL, Roecklein JA, et al. A protein linkage map of
Escherichia coli bacteriophage T7. Nat Genet 1996;12(1):72 e 7.
[41] Finley Jr RL, Brent R. Interaction mating reveals binary and
ternary connections between Drosophila cell cycle regulators.
Proc Natl Acad Sci U S A 1994;91(26):12980 e 4.
[42] Fromont-Racine M, Rain JC, et al. Toward a functional analysis
of the yeast genome through exhaustive two-hybrid screens.
Nat Genet 1997;16(3):277 e 82.
[43] Vidal M. The reverse two-hybrid system. In: Fields S, Bartel P,
editors. The yeast two-hybrid system. New York, NY: Oxford
University Press; 1997. p. 109 e 47.
[44] Vidal M, Brachmann RK, et al. Reverse two-hybrid and one-hybrid
systems to detect dissociation of protein e protein and DNA e protein
interactions. Proc Natl Acad Sci U S A 1996;93(19):10315 e 20.
[45] Walhout AJ, Vidal M. A genetic strategy to eliminate self-acti-
vator baits prior to high-throughput yeast two-hybrid screens.
Genome Res 1999;9(11):1128
803.
[68] Vidal M, Braun P, et al. Genetic characterization of a mammalian
protein
e
34.
e
[46]
Ito T, Chiba T, et al. A comprehensive two-hybrid analysis to
explore the yeast protein interactome. Proc Natl Acad Sci U S A
2001;98(8):4569
protein interaction domain by using a yeast reverse two-
hybrid system. Proc Natl Acad Sci U S A 1996;93(19):10321 e 6.
[69] Walhout AJ, Vidal M. High-throughput yeast two-hybrid assays
for large-scale protein interaction mapping. Methods 2001;24(3):
297 e 306.
[70] Armstrong CM, Li S, Vidal M. Modular scale yeast two-hybrid
screening. In: Celis JE, editor. Cell biology: A laboratory handbook,
3rd ed. San Diego, CA: Academic Press; 2005. p. IV. 39. 1 e 9.
e
74.
[47] Miller JP, Lo RS, et al. Large-scale identification of yeast integral
membrane protein interactions. Proc Natl Acad Sci U S A 2005;
102(34):12123 e 8.
[48] Tarassov K, Messier V, et al. An in vivo map of the yeast protein
interactome. Science 2008;320(5882):1465 e 70.
e
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