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polymorphism responsible for enhanced muscle growth. EMBO
Rep 2010;11:305
[136] Wepf A, Glatter T, Schmidt A, Aebersold R, Gstaiger M. Quan-
titative interaction proteomics using mass spectrometry. Nat
Methods 2009;6:203
11.
[119] Bantscheff M, Eberhard D, Abraham Y, Bastuck S, Boesche M,
Hobson S, et al. Quantitative chemical proteomics reveals
mechanisms of action of clinical ABL kinase inhibitors. Nat
Biotechnol 2007;25:1035 e 44.
[120] Rix U, Superti-Furga G. Target profiling of small molecules by
chemical proteomics. Nat Chem Biol 2009;5:616 e 24.
[121] Sharma K, Weber C, Bairlein M, Greff Z, Keri G, Cox J, et al.
Proteomics strategy for quantitative protein interaction profiling
in cell extracts. Nat Methods 2009;6:741 e 4.
[122] Bantscheff M, Hopf C, Savitski MM, Dittmann A, Grandi P,
Michon AM, et al. Chemoproteomics profiling of HDAC inhibi-
tors reveals selective targeting of HDAC complexes. Nat Bio-
technol 2011;29:255 e 65.
[123] Andersen JS, Wilkinson CJ, Mayor T, Mortensen P, Nigg EA,
Mann M. Proteomic characterization of the human centro-
some by protein correlation profiling. Nature 2003;426:
570 e 4.
[124] Dunkley TP, Watson R, Griffin JL, Dupree P, Lilley KS. Locali-
zation of organelle proteins by isotope tagging (LOPIT). Mol Cell
Proteomics 2004;3:1128 e 34.
[125] Foster LJ, de Hoog CL, Zhang Y, Xie X, Mootha VK, Mann M. A
mammalian organelle map by protein correlation profiling. Cell
2006;125:187
e
5.
[137] Bennett EJ, Rush J, Gygi SP, Harper JW. Dynamics of cullin-
RING ubiquitin ligase network revealed by systematic quantita-
tive proteomics. Cell 2010;143:951 e 65.
[138] Gingras AC, Gstaiger M, Raught B, Aebersold R. Analysis of
protein complexes using mass spectrometry. Nat Rev Mol Cell
Biol 2007;8:645 e 54.
[139] Poser I, Sarov M, Hutchins JR, Heriche JK, Toyoda Y,
Pozniakovsky A, et al. BAC TransgeneOmics: a high-throughput
method for exploration of protein function in mammals. Nat
Methods 2008;5:409 e 15.
[140] Hubner NC, Bird AW, Cox J, Splettstoesser B, Bandilla P, Poser I,
et al. Quantitative proteomics combined with BAC Trans-
geneOmics reveals in vivo protein interactions. J Cell Biol
2010;189:739 e 54.
[141] Hutchins JR, Toyoda Y, Hegemann B, Poser I, Heriche JK,
Sykora MM, et al. Systematic analysis of human protein
complexes identifies chromosome segregation proteins. Science
2010;328:593 e 9.
[142] Kuhner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C,
Rode M, et al. Proteome organization in a genome-reduced
bacterium. Science 2009;326:1235
e
40.
[143] Guell M, van Noort V, Yus E, Chen WH, Leigh-Bell J,
Michalodimitrakis K, et al. Transcriptome complexity in
a genome-reduced bacterium. Science 2009;326:1268
e
99.
[126] Harner M, Korner C, Walther D, Mokranjac D, Kaesmacher J,
Welsch U, et al. The mitochondrial contact site complex,
a
e
71.
[144] Yus E, Maier T, Michalodimitrakis K, van Noort V, Yamada T,
Chen WH, et al. Impact of genome reduction on bacterial
metabolism and its regulation. Science 2009;326:1263 e 8.
e
determinant
of mitochondrial
architecture. EMBO J
2011;30:4356 e 70.
[127] Ohta S, Bukowski-Wills JC, Sanchez-Pulido L, Alves Fde L,
Wood L, Chen ZA, et al. The protein composition of mitotic
chromosomes determined using multiclassifier combinatorial
proteomics. Cell 2010;142:810 e 21.
[128] Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, et al.
Large-scale mapping of human protein-protein interactions by
mass spectrometry. Mol Syst Biol 2007;3:89.
[129] Malovannaya A, Lanz RB, Jung SY, Bulynko Y, Le NT,
Chan DW, et al. Analysis of the human endogenous coregulator
complexome. Cell 2011;145:787 e 99.
[130] Guruharsha KG, Rual JF, Zhai B, Mintseris J, Vaidya P, Vaidya N,
et al. A protein complex network of Drosophila melanogaster.
Cell 2011;147:690 e 703.
[131] Leitner A, Walzthoeni T, Kahraman A, Herzog F, Rinner O,
Beck M, et al. Probing native protein structures by chemical
cross-linking, mass spectrometry, and bioinformatics. Mol Cell
Proteomics 2010;9:1634 e 49.
[132] Chen ZA, Jawhari A, Fischer L, Buchen C, Tahir S, Kamenski T,
et al. Architecture of the RNA polymerase II-TFIIF complex
revealed by cross-linking and mass spectrometry. EMBO J
2010;29:717
[145]
Jordan JD, Landau EM, Iyengar R. Signaling networks:
the
origins of cellular multitasking. Cell 2000;103:193 e 200.
[146] Marshall CJ. Specificity of receptor tyrosine kinase signaling:
transient versus sustained extracellular signal-regulated kinase
activation. Cell 1995;80:179 e 85.
[147] Choudhary C, Mann M. Decoding signalling networks by mass
spectrometry-based proteomics. Nature reviews. Molecular cell
biology 2010;11:427 e 39.
[148] Witze ES, Old WM, Resing KA, Ahn NG. Mapping protein post-
translational modifications with mass
spectrometry. Nature
methods 2007;4:798 e 806.
[149] Ficarro S, Chertihin O, Westbrook VA, White F, Jayes F, Kalab P,
et al. Phosphoproteome analysis of capacitated human sperm.
Evidence of tyrosine phosphorylation of a kinase-anchoring
protein 3 and valosin-containing protein/p97 during capacitation.
J Biol Chem 2003;278:11579 e 89.
[150] Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R,
Beausoleil SA, et al. A tissue-specific atlas of mouse protein
phosphorylation and expression. Cell 2010;143:1174
89.
[151] Kim SC, Sprung R, Chen Y, Xu Y, Ball H, Pei J, et al. Substrate
and functional diversity of lysine acetylation revealed by a pro-
teomics survey. Mol Cell 2006;23:607
e
26.
[133] Behrends C, Sowa ME, Gygi SP, Harper JW. Network organi-
zation of
e
the human autophagy system. Nature 2010;466:
18.
[152] Choudhary C, Kumar C, Gnad F, Nielsen ML, Rehman M,
Walther TC, et al. Lysine acetylation targets protein complexes
and co-regulates major cellular functions. Science 2009;325:
834 e 40.
[153] Kaji H, Kamiie J, Kawakami H, Kido K, Yamauchi Y,
Shinkawa T, et al. Proteomics reveals N-linked glycoprotein
e
76.
[134] Hilger M, Mann M. Triple SILAC to determine stimulus specific
interactions in the wnt pathway. J Proteome Res 2012;11:982 e 94.
[135] Brehme M, Hantschel O, Colinge J, Kaupe I, Planyavsky M,
Kocher T, et al. Charting the molecular network of the drug target
Bcr-Abl. Proc Natl Acad Sci U S A 2009;106:7414 e 9.
68
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