Biomedical Engineering Reference
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11. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment
search tool, J. Mol. Biol. , 215, 403-410 (1990).
12. S. F. Altschul, T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman,
Gapped BLAST and PSI-BLAST: a new generation of protein DB search programs, Nucl.
Acids Res. , 25 (17), 3389-3402 (1997).
13. A. Krogh, M. Brown, I. S. Mian, K. Sjölander, and D. Haussler, Hidden Markov models
in computational biology: applications to protein modeling, J. Mol. Biol. , 235, 1501-1531
(1994).
14. L. Holm and Ch. Sander, Searching protein structure databases has come of age, Proteins ,
19, 165-173 (1994).
15. D. J. Lipman and W. R. Pearson, Rapid and sensitive protein similarity searches, Science ,
227, 1435-1441 (1985).
16. P. Bork, T. Dandekar, Y. Diaz-Lazcoz, F. Eisenhaber, M. Huynen, and Y. Yuan, Predicting
function: from genes to genomes and back, J. Mol. Biol. , 283, 707-725 (1998).
17. Hwang Kai and Xu Zhiwei, Scalable Parallel Computing: Technology, Architecture,
Programming , McGraw-Hill Series in Computer Engineering, 1998.
18. A. Rodriguez, L. G. de la Fraga, E. L. Zapata, J. M. Carazo, and O. Trelles, Biological
Sequence Analysis on Distributed-Shared Memory Multiprocessors, in Proceedings of the
6th Euromicro Workshop on Parallel and Distributed Processing , Madrid, Spain, 1998.
19. A. F. W. Coulson, J. F. Collins, and A. Lyall, Protein and nucleic acid sequence database
searching: a suitable case for parallel processing, Comput. J. , 39, 420-424 (1987).
20. A. S. Deshpande, D. S. Richards, and W. R. Pearson, A platform for biological sequence
comparison on parallel computers, CABIOS , 7, 237-247 (1991).
21. R. Jones, Sequence pattern matching on a massively parallel computer, CABIOS ,8,
377-383 (1992).
22. T. F. Smith and M. S. Waterman, Identification of common molecular subsequences, J. Mol.
Biol. , 147, 195-197 (1981).
23. S. S. Sturrock and J. Collins, MPsrch version 1.3, BioComputing Research Unit , University
of Edinburgh, UK, 1993.
24. C. A. Orengo, N. P. Brown, and W. T. Taylor, Fast structure alignment for protein databank
searching, Proteins , 14, 139-167 (1992).
25. D. Fisher, O. Bachar, R. Nussinov, and H. Wolfson, An efficient automated computer vision
based technique for detection of three-dimensional structural motifs in proteins, J. Biomol.
Struct. Dyn , 9, 769-789 (1992).
26. I. N. Shindyalov and P. E. Bourne, Protein structure alignment by incremental combina-
torial extension (CE) of the optimal path, Protein Eng. , 11 (9), 739-747 (1998).
27. F. Corpet, Multiple sequence alignments with hierarchical clustering, Nucl. Acid Res. , 16,
10881-10890 (1988).
28. O. Gotoh, Optimal alignment between groups of sequences and its application to multiple
sequence alignment, CABIOS , 9 (2), 361-370 (1993).
29. W. Miller, Building multiple alignments from pairwise alignments, CABIOS , 9 (2),
169-176 (1993).
30. J. D. Thompson, D. G. Higgins, and T. J. Gibson, Clustal W: improving the sensitivity
of progressive multiple sequence alignment through sequence weighting position-specific
gap penalties and weight matrix choice, Nucl. Acids Res. , 22, 4673-4680 (1994).
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