Biomedical Engineering Reference
In-Depth Information
11. S. F. Altschul, W. Gish, W. Miller, E. W. Myers, and D. J. Lipman, Basic local alignment
search tool,
J. Mol. Biol.
, 215, 403-410 (1990).
12. S. F. Altschul, T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman,
Gapped BLAST and PSI-BLAST: a new generation of protein DB search programs,
Nucl.
Acids Res.
, 25 (17), 3389-3402 (1997).
13. A. Krogh, M. Brown, I. S. Mian, K. Sjölander, and D. Haussler, Hidden Markov models
in computational biology: applications to protein modeling,
J. Mol. Biol.
, 235, 1501-1531
(1994).
14. L. Holm and Ch. Sander, Searching protein structure databases has come of age,
Proteins
,
19, 165-173 (1994).
15. D. J. Lipman and W. R. Pearson, Rapid and sensitive protein similarity searches,
Science
,
227, 1435-1441 (1985).
16. P. Bork, T. Dandekar, Y. Diaz-Lazcoz, F. Eisenhaber, M. Huynen, and Y. Yuan, Predicting
function: from genes to genomes and back,
J. Mol. Biol.
, 283, 707-725 (1998).
17. Hwang Kai and Xu Zhiwei,
Scalable Parallel Computing: Technology, Architecture,
Programming
, McGraw-Hill Series in Computer Engineering, 1998.
18. A. Rodriguez, L. G. de la Fraga, E. L. Zapata, J. M. Carazo, and O. Trelles, Biological
Sequence Analysis on Distributed-Shared Memory Multiprocessors, in
Proceedings of the
6th Euromicro Workshop on Parallel and Distributed Processing
, Madrid, Spain, 1998.
19. A. F. W. Coulson, J. F. Collins, and A. Lyall, Protein and nucleic acid sequence database
searching: a suitable case for parallel processing,
Comput. J.
, 39, 420-424 (1987).
20. A. S. Deshpande, D. S. Richards, and W. R. Pearson, A platform for biological sequence
comparison on parallel computers,
CABIOS
, 7, 237-247 (1991).
21. R. Jones, Sequence pattern matching on a massively parallel computer,
CABIOS
,8,
377-383 (1992).
22. T. F. Smith and M. S. Waterman, Identification of common molecular subsequences,
J. Mol.
Biol.
, 147, 195-197 (1981).
23. S. S. Sturrock and J. Collins, MPsrch version 1.3,
BioComputing Research Unit
, University
of Edinburgh, UK, 1993.
24. C. A. Orengo, N. P. Brown, and W. T. Taylor, Fast structure alignment for protein databank
searching,
Proteins
, 14, 139-167 (1992).
25. D. Fisher, O. Bachar, R. Nussinov, and H. Wolfson, An efficient automated computer vision
based technique for detection of three-dimensional structural motifs in proteins,
J. Biomol.
Struct. Dyn
, 9, 769-789 (1992).
26. I. N. Shindyalov and P. E. Bourne, Protein structure alignment by incremental combina-
torial extension (CE) of the optimal path,
Protein Eng.
, 11 (9), 739-747 (1998).
27. F. Corpet, Multiple sequence alignments with hierarchical clustering,
Nucl. Acid Res.
, 16,
10881-10890 (1988).
28. O. Gotoh, Optimal alignment between groups of sequences and its application to multiple
sequence alignment,
CABIOS
, 9 (2), 361-370 (1993).
29. W. Miller, Building multiple alignments from pairwise alignments,
CABIOS
, 9 (2),
169-176 (1993).
30. J. D. Thompson, D. G. Higgins, and T. J. Gibson, Clustal W: improving the sensitivity
of progressive multiple sequence alignment through sequence weighting position-specific
gap penalties and weight matrix choice,
Nucl. Acids Res.
, 22, 4673-4680 (1994).
Search WWH ::
Custom Search