Biomedical Engineering Reference
In-Depth Information
Table 1.1 Overview of Rab-GEFs, their sites of localization and their localization mechanism
GEF
Rab
Localization
Localizer(s)
TRAPP (Cai et al.
2007
; Wang
et al.
2000
)
Rab1
ER-Golgi
Sec23 (CopII)
Ric1/Rgp1 (Pusapati et al.
2012
)
Rab6
Golgi, cytosol
Rab33b:GTP
Sec2 (Ortiz et al.
2002
; Walch-
Solimena et al.
1997
)
Sec4
Secretory vesicles Ypt32:GTP, Sec15
(exocyst)
Rabin8 (Chiba et al.
2013
; Hattula
et al.
2002
; Knodler et al.
2010
)
Rab8
Cilia, cortical actin Rab11:GTP, Sec15
(exocyst),
Phosphatidylserine
Rabex5 (Horiuchi et al.
1997
)
Rab5
Early endosomes
Rabaptin5,
ubiquitinylation
DrrA/SidM (Brombacher et al.
2009
;
Machner and Isberg
2007
; Murata
et al.
2006
)
Rab1
Legionella
containing vac-
uole/plasma
membrane
PI(4)P
Mon1/Ccz1 (Lachmann et al.
2012
;
Nordmann et al.
2010
)
Ypt7/Rab7 Late endosomes
Vps21(Rab5):GTP
DENND1A (Allaire et al.
2010
;
Yoshimura et al.
2010
)
Rab35
Clathrin coated
pits, (plasma
membrane)
AP2
DENND5A/5B (Miserey-Lenkei
et al.
2007
; Recacha et al.
2009
;
Yoshimura et al.
2010
)
Rab39
Golgi
Rab6:GTP
DENND2 (Yoshimura et al.
2010
)
Rab9
Actin filaments
lysosomal
trafficking
MADD/Rab3Gep (Figueiredo
et al.
2008
; Yoshimura et al.
2010
)
Rab27
Melanosomes
Bloc-3 (Gerondopoulos et al.
2012
)
Rab32/38 Melanosomes
Crag (Xiong et al.
2012
)
Rab11
Rhabdomeres
FAM116 (Linford et al.
2012
)
Rab14
Recycling
endosomes,
cytosol
MTMR5/13 (Yoshimura et al.
2010
) Rab28
DENND1C (Yoshimura et al.
2010
) Rab13
DENND3 (Yoshimura et al.
2010
) Rab12
DENND1B (Yoshimura et al.
2010
) Rab35
In the case of recently discovered GEFs, this information is incomplete or absent
1.5 Do Additional Factors Contribute to Rab Targeting?
Although the evidence described is strong support for a decisive role of GEFs in
Rab targeting, over the years other factors have been suggested to play an important
part. The original hypothesis that the hypervariable C-terminal region alone acted
as the sole determining factor (Chavrier et al.
1991
) has been challenged and at least
partially disproved, suggesting that multiple regions in Rabs contribute to mem-
brane targeting (Ali et al.
2004
). However, further testing of the role of the
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