SuMo: A Tool for Protein Function Inference Based on 3D Structures Comparisons - Identification of Ligand Binding Site and Protein-Protein Interaction Area - page 11

Table 1.2 Result of the run on a set constituted by 61 proteases mixed with 970 isomerases. Serine proteases signatures are displayed with the number of
objects recovered by residue. 1 mean all objects of the residue were recovered
N° aa query 1AFQ 1H4W 1A5H 1GI7 1FAX 1FLE 1LTO 1BML 1D3P 1EZX 1FQ3 1IAU 1DDJ 1SBC

V17 1 1 1 1 1 1 1 1 1 1 1 1

C42 1 1 1 1 1 1 1 1 1 1 1 1 1

A55 1 1 1 1 1 1 1 1 1 1 1 1 1 1

A56 1 1 1 1 1 1 1 1 1 1 1 1 1 1

Catalytic H57 1 1 1 1 1 1 1/5 1 1 1 3/5 1 1 1/5 2/5

C58 1 1 1 1 1 1 1 1 1 1 1 1 1 1

G59 1 1 1 1 1 1 1 1 1 1

Y94 1 1 1 1/2 1 1/2 1/2 1/2 1 1

N95 1 1 1 1 1 1 1 1 1

S96 1 1 1/2 1/2 1/2 1/2

L97 1 1 1/3 1/3 1/3 1/3 1/3 1/3

T98 1 1 1 1 2/3 1/3 1 1/3 1/3

I99 1 1 1 1/4 1/4 1/4 1/4 2/4 2/4 1/4 1/4 1/4

N100 1 1 1/2 1/2 1/2 1/2 1/2 1/2 1/2 1 1/2 1/2

N101 1 1 1 1 1 1 1 1 1 1 1 1

Catalytic D102 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1/2

L143 1 1 1 1 1 2/3 1 1 1

Y146 1 1

N165 1 1 1 1 1 1

C168 1 1 1 1/2 1 1 1 1 1 1 1/2 1/2 1

K169 1 1 1 1 1 1/2 1 1 1/2

Y171 1 1 1 1 1 1 1

W172 1 1 5/6 2/6 4/6 3/6 1/6 1/6

G173 1 1 1 1 1 1

T174 1 1 1 1/2 1/2 1/2 1/2 1/2

(continued)