One-Photon and Two-Photon Excitation of Fluorescent Proteins - Fluorescent Proteins: From Understanding to Design - page 34

32. Shaner N, Campbell RE, Steinbach PA, Giepmans BNG, Palmer AE, Tsien RY (2004)
Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma
sp red fluorescent protein. Nat Biotechnol 22:1567-1572
33. Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF,
Lukyanov S, Lukyanov KA (2006) Engineering of a monomeric green-to-red photoactivatable
fluorescent protein induced by blue light. Nat Biotechnol 24(4):461-465
34. Nienhaus K, Nienhaus GU, Wiedenmann J, Nar H (2005) Structural basis for photo-induced
protein cleavage and green-to-red conversion of fluorescent protein EosFP. Proc Natl Acad
Sci USA 102(26):9156-9159
35. Mizuno H, Mal TK, Tong KI, Ando R, Furuta T, Ikura M, Miyawaki A (2003) Photo-induced
peptide cleavage in the green-to-red conversion of a fluorescent protein. Mol Cell 12:1051-1058
36. Lukyanov KA, Fradkov AF, Gurskaya NG, Matz MV, Labas YA, Savitsky AP, Markelov ML,
Zaraisky AG, Zhao X, Fang Y, Tan W, Lukyanov SA (2000) Natural animal coloration can
be determined by a nonfluorescent green fluorescent protein homolog. J Biol Chem
275(34):25879-25882
37. Campbell RE, Tour O, Palmer AE, Steinbach PA, Baird GS, Zacharias DA, Tsien RY (2002)
A monomeric red fluorescent protein. Proc Natl Acad Sci USA 99:7877-7882
38. Wiedenmann J, Schenk A, Rcker C, Girod A, Spindler K-D, Nienhaus GU (2002) A far-red
fluorescent protein with fast maturation and reduced oligomerization tendency from entac-
maea quadricolor (anthozoa, actinaria). Proc Natl Acad Sci USA 99(18):11646-11651
39. Prescott M, Ling M, Beddoe T, Oakley AJ, Dove S, Hoegh-Guldberg O, Devenish RJ,
Rossjohn J (2003) The 2.2 ˚ crystal structure of a pocilloporin pigment reveals a nonplanar
chromophore conformation. Structure 22:275-284
40. Wang L, Jackson WC, Steinbach PA, Tsien RY (2004) Evolution of new nonantibody
proteins via iterative somatic hypermutation. Proc Natl Acad Sci USA 101(48):16745-16749
41. Lin MZ, McKeown MR, Ng H-L, Aguilera TA, Shaner NC, Campbell RE, Adams SR, Gross LA,
Ma W, Alber T, Tsien RY (2009) Autofluorescent proteins with excitation in the optical
window for intravital imaging in mammals. Chem Biol 16(11):1169-1179
42. Chan MCY, Karasawa S, Mizuno H, Bosanac I, Ho D, Priv GG, Miyawaki A, Ikura M (2006)
Structural characterization of a blue chromoprotein and its yellow mutant from the sea
anemone Cnidopus japonicus . J Biol Chem 281(49):37813-37819
43. Gross LA, Baird GS, Hoffman RC, Baldridge KK, Tsien RY (2000) The structure of the
chromophore within dsred, a red fluorescent protein from coral. Proc Natl Acad Sci USA
97:11990-11995
44. Petersen J, Wilmann PG, Beddoe T, Oakley AJ, De-venish RJ, Prescott M, Rossjohn J (2003)
The 2.0-angstrom crystal structure of eqFP611, a far red fluorescent protein from the sea
anemone Entacmaea quadricolor . J Biol Chem 287:44626-44631
45. Shu X, Shaner NC, Yarbrough CA, Tsien RY, Remington SJ (2006) Novel chromophores
and buried charges control color in mFruits. Biochemistry 45(32):9639-9647
46. Kikuchi A, Fukumura E, Karasawa S, Mizuno H, Miyawaki A, Shiro Y (2008) Structural
characterization of a thiazoline-containing chromophore in an orange fluorescent protein,
monomeric Kusabira Orange. Biochemistry 47(44):11573-11580
47. Remington SJ, Wachter RM, Yarbrough DK, Branchaud B, Anderson DC, Kallio K,
Lukyanov KA (2005) zFP538, a yellow-fluorescent protein from Zoanthus , contains a
novel three-ring chromophore. Biochemistry 44(1):202-212
48. Quillin ML, Anstrom DM, Shu X, O'Leary S, Kallio K, Chudakov DM, Remington SJ
(2005) Kindling fluorescent protein from Anemonia sulcata : dark-state structure at 1.38 ˚
resolution. Biochemistry 44(15):5774-5787
49. Tretyakova YA, Pakhomov AA, Martynov VI (2007) Chromophore structure of the kindling
fluorescent protein asFP595 from Anemonia sulcata . J Am Chem Soc 129:7748-7749
50. Yampolsky IV, Remington SJ, Martynov VI, Potapov VK, Lukyanov S, Lukyanov KA
(2005) Synthesis and properties of the chromophore of the asFP595 chromoprotein from
Anemonia sulcata . Biochemistry 44(15):5788-5793