Biomedical Engineering Reference
In-Depth Information
26.
MacIsaac, K.D., Fraenkel, E.: Practical strategies for discovering regulatory DNA sequence
motifs. PLoS Compututational Biology
2
(4), e36 (2006)
27.
Malerba, D., Lisi, F.A.: An ILP method for spatial association rule mining. In: In Working
notes of the First Workshop on Multi-Relational Data Mining, pp. 18-29 (2001)
28.
Mannila, H., Toivonen, H.: Levelwise search and borders of theories in knowledge discovery.
Data Mining and Knowledge Discovery
1
(3), 241-258 (1997)
29.
Mitchell, T.: Machine Learning. McGraw-Hill, NY (1997)
30.
Muggleton, S., Srinivasan, A., King, R.D., Sternberg, M.J.E.: Biochemical knowledge discov-
ery using inductive logic programming. In: S. Arikawa, H. Motoda (eds.) Discovery Science,
LNCS
, vol. 1532, pp. 326-341. Springer, Berlin (1998)
31.
Nienhuys-Cheng, S.H., De Wolf, R.: Foundations of Inductive Logic Programming,
LNAI
,
vol. 1228. Springer, Berlin (1997)
32.
Perdikuri, K., Tsakalidis, A.K.: Motif extraction from biological sequences: Trends and con-
tributions to other scientific fields. In: Proc. of the 3rd Int. Conf on Information Technology
and Applications (ICITA), vol. 1, pp. 453-458. IEEE Computer Society (2005)
33.
Plotkin, G.D.: A note on inductive generalization. Machine Intelligence
5
, 153-163 (1970)
34.
Remnyi, A., Schler, H.R., Wilmanns, M.: Combinatorial control of gene expression.
Nature
Structural & Molecular Biology
11
(9), 812-815 (2004)
35.
Rigoutsos, I., Floratos, A.: Combinatorial pattern discovery in biological sequences: The
TEIRESIAS algorithm [published erratum appears in bioinformatics 1998;14(2): 229]. Bioin-
formatics
14
(1), 55-67 (1998)
36.
Robin, S., Rodolphe, F., Schbath, S.: DNA, Words and Models: Statistics of Exceptional
Words. Cambridge University Press, London (2005)
37.
Sandelin, A., Alkema, W., Engstrom, P.G., Wasserman, W.W., Lenhard, B.: JASPAR: an open-
access database for eukaryotic transcription factor binding profiles.
Nucleic Acids Research
32
(Database-Issue), 91-94 (2004)
38.
Sandve, G.K., Drabløs, F.: Generalized composite motif discovery. In: R. Khosla, R.J. Howlett,
L.C. Jain (eds.) Knowledge-Based Intelligent Information and Engineering Systems, 9th Int.
Conf., KES 2005, vol. 3,
LNCS
, vol. 3683, pp. 763-769. Springer (2005)
39.
Sandve, G.K., Abul, O., Drabløs, F.: Compo: composite motif discovery using discrete models.
BMC Bioinformatics
9
(2008)
40.
Scott, D.: On optimal and data-based histograms. Biometrika
66
, 605-610 (1979)
41.
Segal, E., Sharan, R.: A discriminative model for identifying spatial cis-regulatory modules.
Journal of Computational Biology
12
(6), 822-834 (2005)
42.
Sharan, R., Ovcharenko, I., Ben-Hur, A., Karp, R.M.: CREME: a framework for identifying
cis-regulatory modules in human-mouse conserved segments. Bioinformatics
19 (suppl 1)
(18),
S283-S291 (2003)
43.
Sinha, S., Tompa, M.: A statistical method for finding transcription factor binding sites. In:
P.E. Bourne, M. Gribskov, R.B. Altman, N. Jensen, D.A. Hope, T. Lengauer, J.C. Mitchell,
E.D. Scheeff, C. Smith, S. Strande, H. Weissig (eds.) ISMB, pp. 344-354. AAAI (2000)
44.
Srinivasan, A., King, R.D., Muggleton, S., Sternberg, M.J.E.: Carcinogenesis predictions us-
ing ILP. In: N. Lavrac, S. Dzeroski (eds.) Inductive Logic Programming, 7th International
Workshop, ILP-97,
LNCS
, vol. 1297, pp. 273-287. Springer (1997)
45.
Srinivasan, A., King, R.D., Muggleton, S., Sternberg, M.J.E.: The predictive toxicology evalu-
ation challenge. In: Proc. of the 15th Int. Joint Conf. on Artificial Intelligence (IJCAI), pp. 4-9
(1997)
46.
Stormo, G.D.: DNA binding sites: representation and discovery. Bioinformatics
16
(1), 16-23
(2000)
47.
Takusagawa, K.T., Gifford, D.K.: Negative information for motif discovery. In: R.B. Altman,
A.K. Dunker, L. Hunter, T.A. Jung, T.E. Klein (eds.) Pacific Symposium on Biocomputing,
pp. 360-371. World Scientific, Singapore (2004)
48.
Turi, A., Loglisci, C., Salvemini, E., Grillo, G., Malerba, D., D'Elia, D.: Computational anno-
tation of UTR cis-regulatory modules through frequent pattern mining. BMC Bioinformatics
10 (suppl 6)
, S25 (2009)
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