The Molecular Basis of ABA-Mediated Plant Response to Drought - Abiotic Stress: Plant Responses and Applications in Agriculture - page 111

Type Resource/ database URL

Integrative
databases

TAIR http://www.arabidopsis.org/

MIPS http://mips.helholtz-muenchen.de

PlantGDB http://www.plantgdb.org/

EnsEMBLPlants http://plants.ensembl.org/index.html

Brachypodiumdb http://db.brachypodium.org/

EBI http://www.ebi.ac.uk/embl/

GenBank http://www.ncbi.nlm.nih.gov/genbank/

Gramene http://www.gramene.org/

Oryzabase http://www.shigen.nig.ac.jp/rice/oryzabase/

GrainGenes http://wheat.pw.usda.gov/

Large-scale
collections of full-
length cDNA
clones

flcDNA A. thaliana http://rarge.psc.riken.jp/

flcDNA O. sativa http://cdna01.dna.affrc.go.jp/cDNA/

http://www.ncgr.ac.cn/ricd

flcDNA H. vulgare http://www.shigen.nig.ac.jp/barley/

flcDNA T. aestivum http://trifldb.psc.riken.jp/index.pl

flcDNA Z. mays http://www.maizecdna.org/

ViroBLAST http://indra.mullins.microbiol.washington.edu/viroblast/

viroblast.php

TF databases AGRIS http://arabidopsis.med.ohio-state.edu/

PlantTFDB http://planttfdb.cbi.edu.cn/

GRASSIUS http://grassius.org/

Microarray bulk
data retrieval

NASCarrays http://affymetrix.arabidopsis.info/narrays/experimentbrowse.pl

ArrayExpress http://www.ebi.ac.uk/arrayexpress/

AtGenExpress http://www.weigelworld.org/resources/microarray/AtGenExpress/

GEO http://www.ncbi.nlm.nih.gov/geo/

PlexDB http://www.plexdb.org/

Gene expression
analysis resources

Genevestigator https://www.genevestigator.com/gv/

BAR http://esc4037-shemp.csb.utoronto.ca/welcome.htm

eFP Browser http://esc4037-shemp.csb.utoronto.ca/efp/cgi-bin/efpWeb.cgi

Functional
information

GeneMANIA http://www.genemania.org/

IntACT http://www.ebi.ac.uk/intact/

BioGRID http://thebiogrid.org/

Table 2. Web-based resources for gene expression analysis for Arabidopsis and other species, including crops.